CsaV3_4G002630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G002630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr4: 1629417 .. 1632181 (-)
RNA-Seq Expression	CsaV3_4G002630
Synteny	CsaV3_4G002630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACACTAGAAGAATAGAATAGAAGATTGAATATCCAACCTAAGCTTTTTAAAGGAAGATTATACTAATTAATGATTCTATCTTAACTATTATTGATTCTTATGAAAATTTGTGATTAGTAACTAAACGTATTAAGAGAAAAAGACACATTTAATATGAAATAGTATCGACCTGAGTAGAAAGTTAGAATTCATACATGTGTGAGAAAGTATCGTCGACATGAACATGATTGAAAAAAGAGTCATCTATTCAAAAAAGCTTCGAATTGGATACGAAAATTCTATTATTAAATGGCTTGCTGTTTAAGTGATAAACCAAAACTGAGATAAACCAAAGAAGCTTCGAAGGCTCTTCTATTGCTATCCCGACAAACTGAGATATACCGAAGTCGCAACGCCGAGAGCGTACACTGCAACCACAGTTCCAACCACATCCTTTCCGGACCGAGTCACGGCGCCGATTCCGGCGATTCCGGCGATTCCCACCGGAACTCGAACCATCACTTTCTTTCCCACGTTCTTCACCACAGCCTCTGCGAATAGTTCAATCGCCCAACGGTTAAACAGGATCAGTCCTAGTGCTTCGTCTTCACGATCCGAGTCATCGCGATTGACGGCTCGTAGTGCTGAGTCCACCTGGAGACGAGTCGGGGGAGAGGGAAGCCAGTTGGTGATTAGTGGATGCGGCTGGACGACGGTGAGGAGGTGGTGAAGGTGGTCGGCGGCGGTGCAGAGTTGATAGGGGAAAACGCCGTTGTATGCGTGCTGTGTTAGGGCAAGGCAGTGGGAGAAGGTTGAATTGCAGGCTGAGTCAAATTCATGCGAGTTGGTAAGTGAGTTTCTGACTCGTTTCGAAGCTGATATTCCCATTATCTTTCTCGCTCTCGCTCTCGCTCTCTCCTTCCCTCCACCAATTCTGGTTTTGAAGGACACTTTAATAAATATCTGAAGACAAAAGCCTTTTATATCAAGTGTAGTTTTCATATAGATTAGAAAAATATCTTTAAACCTTTCCAATAAGCTTCTCAAAAATTTTAAGAATACCCATACCATTAGATTTCTGCTACATCCCATCTTCACTGAACTGAGTTTCTCGCAAAAGGGCGGTTGGAGATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTATTGCTTACTCCTGTTTAACGTCTGGGAATATTGCAAAAGCTAGATATTATATTTTTATGCCTTGAACTCTCTTATGGCTGGCTTAGTTATAATAATTGCATAAATTGAAAGTTCAACTCAATACCAATGGTCCTTAGAGTTCAGGTTTTATAAGGTTCAATTACAACAATGAGTAAAAGGTTGATGGTGCTGTATTTTTGCATTTTCTTTCGCTGTCATTTATTTTTGCATAGTTTAAATTTTCTTTTTGCATTGCTATTGAGTTAAAATTTCAAGTTTCATTTTATGCAATTATTATAACAATGAGTGCTTGATGGTGTTATTGTAGCTGTACTTTTGCATTTTATTTCGTTATCAAAAGGAAACACATTTTGTATACCATACGAATCGGTTCCTTTGTACTCTTGGATTTCTTCAGATACTTTAATTATCAATGAAATTGAAATTGTCTTGTATACATAAAAAAAAAATCATTTATTTTGTTTTGGCTTTTTCCTTTACAAGAAATACAATCATTTGAAATTCTGATCATAAAAGTTCACTGGAATGATACATCTGGATTCTCTTCTGCAGCCTTTAGCATTCCTTCCATTTCAAATTTTATTTCATCTTAACTGAATTCAGGCTTTAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAAACATGCAGTTGGGTTACTTCTGGGAATGTATTTGATTTTTTATCTGATCAATGTCTTTGGGATTCTCATAATCCTTGAATACTTTGTAACAGCTAGTAATGAATGAAGGTAAACTCTAGTCCTAGAGGTTCTCTCATTAACTAATAACTATGATGCGAGTGGCTAATGCTATAGTTTTCTTCTGTTTCAACCGGAATTAAACAAGGATAGATTGATACAATAGAAACTTAAATGACCATCCGTAATCCAGTAAATTTTGAAATAAATTATGTACAAATTTA

mRNA sequence

ATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA

Coding sequence (CDS)

ATGAAATCTACTCTAGTGGGTCCTCTTCAACTCCATTTTCTTCAATTGGGTCTTCGCCAAAACCTCACGAACCGAAGCCTCCGTTGTGGTACGGCAGCTCCACCTCCAAATATCATTTGTGGCCTCAGAAAGGGCTCGAACAGGCCCTTAGGGTTGTCAAGGGTGCCCTCCAATGAGGCAATTCAAGCAGTTCAATCTCTCAAGCTTGCTAAATCCACCTCCAAAATGGAAGACGTTATCAATACCAAGCTCGGCAGATTGCTTAAAGCAGACTTGTTTGATGCTCTGTCTGAATTACAAAGGCAAAATGAACTGGAATTATCGCTTCAGGTCTTCAAATTTATGCAAAATGAAGAATGGTTCGAGCCAGATTTAAGGTTATACCATGGAATGATTATGCTGATGGGAAAGAACAAAATGATTGAAATGGCTGAAGAGGTTTTTCATAAGTTAAGAAAGGATGGGTTAGAACCAGATACAAGAGCTTTCAATGAAATGATGGGAGCATATCTGCAAGTGGACATGATCGAAAGAGCTGTTGAGACATACAGATTGATGATAGCTTCAGGTTGTACTCCAGATGAACTGACTTTCAAGATCTTGATAAAGAATCTTGAGAAATTTAGGGAAGAATTTGCTGTAGTGGTGAAGAAAGACTGTAATGAGTACTTGGATAATCCTCAGAAGTTTTTCAACGATAACGGGCAGAAACTGACAACGAAAGTTCGAATTCTTTAA

Protein sequence

MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTTKVRIL*

Homology

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BLAST of CsaV3_4G002630 vs. NCBI nr
Match: XP_004152311.2 (pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 3.0e-133
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA
Sbjct: 8   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 67

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW
Sbjct: 68  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 127

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV
Sbjct: 128 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 187

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT
Sbjct: 188 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 247

Query: 241 KVRIL 246
           KVRIL
Sbjct: 248 KVRIL 252

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BLAST of CsaV3_4G002630 vs. NCBI nr
Match: KGN53003.1 (hypothetical protein Csa_015115 [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 3.0e-133
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

Query: 241 KVRIL 246
           KVRIL
Sbjct: 241 KVRIL 245

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BLAST of CsaV3_4G002630 vs. NCBI nr
Match: KAA0044536.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119
Identity = 220/241 (91.29%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLHF QLGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC+EYLDNPQKFFND GQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

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BLAST of CsaV3_4G002630 vs. NCBI nr
Match: XP_008454079.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis melo] >TYK17047.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 437.6 bits (1124), Expect = 7.2e-119
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC EYLDNPQKFFND GQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

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BLAST of CsaV3_4G002630 vs. NCBI nr
Match: XP_038878176.1 (pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >XP_038878177.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 4.7e-110
Identity = 206/245 (84.08%), Postives = 222/245 (90.61%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQ HF QLGLRQ+LTN SL C TAAPPPNIICGLRKG  +PLG SRVPS EA
Sbjct: 1   MKSTLMGSLQFHFPQLGLRQDLTNPSLHCCTAAPPPNIICGLRKGLRKPLGRSRVPSIEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVIN+KL RLLKADLFDAL+ELQRQNELELSLQVFKF+QNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINSKLSRLLKADLFDALTELQRQNELELSLQVFKFIQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMI++ GKNKMIEMAEE+FHKL+KDGLEPD RAFNEMMGAYLQVDM+ERAV
Sbjct: 121 YEPDLRLYHGMILMTGKNKMIEMAEEIFHKLKKDGLEPDIRAFNEMMGAYLQVDMVERAV 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           ETY LM ASGCTPD+LTFKILIKNLEKFREEFA VVKK+CN YLD+P+KF ND  QK T 
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLEKFREEFAAVVKKECNVYLDSPEKFLNDVEQKSTA 240

Query: 241 KVRIL 246
           K RIL
Sbjct: 241 KGRIL 245

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BLAST of CsaV3_4G002630 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.0e-19
Identity = 54/177 (30.51%), Postives = 101/177 (57.06%), Query Frame = 0


Query: 34  PPPNIICGLRKGSNRPLGL----SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLGRLL 93
           P P  +   R    RP G      ++   EA+  +  LK L +   K++  I T + RLL
Sbjct: 47  PKPFTVFVSRFHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLL 106

Query: 94  KADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVF 153
           K D+   + EL+RQ E  L++++F+ +Q +EW++PD+ +Y  +I+ + K+K ++ A  ++
Sbjct: 107 KLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALW 166

Query: 154 HKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL 206
            K++K+ L PD++ + E++  +L+      A+  Y  M+ S   P+EL F++L+K L
Sbjct: 167 EKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223

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BLAST of CsaV3_4G002630 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 53/191 (27.75%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 57  SNEAIQAVQSLKLAKSTS-KMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I + + RLLK+DL   L+E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 176
           + E W+ PD+  Y  M+M++ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYL------DNPQK 236
              A+  Y  M  S   P  L F++++K L  +  E    VK D  E        D P+ 
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPY-PELREKVKDDFLELFPGMIVYDPPED 181

Query: 237 FFNDNGQKLTT 241
              D+ ++  T
Sbjct: 182 ICEDSDEEART 191

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BLAST of CsaV3_4G002630 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-09
Identity = 46/180 (25.56%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 59  EAIQAVQSL--KLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQ 118
           EA + V+SL  + A    ++  V++  +  +     F    EL R++     L VF++MQ
Sbjct: 56  EAAELVRSLLRRTAGGKERLVPVLDRHVRVVRTEHCFLLFEELGRRDAWLQCLDVFRWMQ 115

Query: 119 NEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYL----Q 178
            + W+  D  +Y  +I +MG+   I MA  +F ++R  G +PDT  +N ++GA+L    +
Sbjct: 116 KQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDK 175

Query: 179 VDMIERAVETY-RLMIASGCTPDELTFKILIKNLEKFREEFAV-VVKKDCNEYLDNPQKF 231
              + +A+  + ++     C P  +T+ IL++   +  +   V ++ KD +E + +P  +
Sbjct: 176 TKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVY 235

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BLAST of CsaV3_4G002630 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-09
Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 0


Query: 37  NIICGLRKGSNRPLGLSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDAL 96
           +I CG R  +  PL   R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPR-DNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  SELQRQNELELSLQVFKFMQNEEWFEP-DLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDG 156
            EL RQ+   L++ V   ++ E  + P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASG-----CTPDELTFKILIKNLEKFRE 211
              D +A  +++ A +  +  E  V  Y LM  SG        DE   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

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BLAST of CsaV3_4G002630 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 41/155 (26.45%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 53  SRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLG--RLLKADLFDALSELQRQNELELSLQ 112
           +++ S +AI  +   +  KS      +I  K G  +LL   + ++L E       E ++Q
Sbjct: 82  TKIASRKAISIILRREATKS------IIEKKKGSKKLLPRTVLESLHERITALRWESAIQ 141

Query: 113 VFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAY 172
           VF+ ++ + W++P++ +Y  +I+++GK K  E A E+F ++  +G   +   +  ++ AY
Sbjct: 142 VFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 201

Query: 173 LQVDMIERAVETYRLMIAS-GCTPDELTFKILIKN 205
            +    + A      M +S  C PD  T+ ILIK+
Sbjct: 202 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

[Close]

BLAST of CsaV3_4G002630 vs. ExPASy TrEMBL
Match: A0A0A0KU23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA
Sbjct: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV
Sbjct: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT
Sbjct: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240

Query: 241 KVRIL 246
           KVRIL
Sbjct: 241 KVRIL 245

[Close]

BLAST of CsaV3_4G002630 vs. ExPASy TrEMBL
Match: A0A5A7TQZ8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002830 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.1e-120
Identity = 220/241 (91.29%), Postives = 230/241 (95.44%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLHF QLGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPQLGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC+EYLDNPQKFFND GQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCHEYLDNPQKFFNDEGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of CsaV3_4G002630 vs. ExPASy TrEMBL
Match: A0A5D3CZ95 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001960 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.5e-119
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC EYLDNPQKFFND GQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of CsaV3_4G002630 vs. ExPASy TrEMBL
Match: A0A1S3BX97 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=3656 GN=LOC103494600 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.5e-119
Identity = 219/241 (90.87%), Postives = 229/241 (95.02%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLHF +LGLRQNLTNRSL C TAAPPPNIICGLRKG  +PLG SRVPSNEA
Sbjct: 1   MKSTLMGRLQLHFPELGLRQNLTNRSLHCCTAAPPPNIICGLRKGLKKPLGRSRVPSNEA 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAK TSKMEDVINTKL RLLKADLFDAL+ELQRQNELELSLQVFKFMQNEEW
Sbjct: 61  IQAVQSLKLAKCTSKMEDVINTKLSRLLKADLFDALTELQRQNELELSLQVFKFMQNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDLRLYHGMIM+MGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERA 
Sbjct: 121 YEPDLRLYHGMIMMMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAA 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           +TYRLMIASGCTPD+LTFKILIKNLEKF+EEFA+VVKKDC EYLDNPQKFFND GQKLTT
Sbjct: 181 DTYRLMIASGCTPDKLTFKILIKNLEKFKEEFAIVVKKDCYEYLDNPQKFFNDEGQKLTT 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of CsaV3_4G002630 vs. ExPASy TrEMBL
Match: A0A6J1IY98 (pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima OX=3661 GN=LOC111479570 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 4.2e-104
Identity = 196/245 (80.00%), Postives = 216/245 (88.16%), Query Frame = 0


Query: 1   MKSTLVGPLQLHFLQLGLRQNLTNRSLRCGTAAPPPNIICGLRKGSNRPLGLSRVPSNEA 60
           MKSTL+G LQLH  QLG RQNLTN +L C TA PPPNIICGLRKG  +PLG SRVPS E+
Sbjct: 1   MKSTLMGRLQLHLPQLGFRQNLTNPTLHCCTAGPPPNIICGLRKGQRKPLGKSRVPSTES 60

Query: 61  IQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFMQNEEW 120
           IQAVQSLKLAKS SKMEDVIN+KL RLLKADLFDAL+ELQRQNELELSLQVFKFM+NEEW
Sbjct: 61  IQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEW 120

Query: 121 FEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDMIERAV 180
           +EPDL LYH MI +MGKNKMIEMAEEVFH  ++DGLEPDTRAFNEMMGAYLQVDM+ERAV
Sbjct: 121 YEPDLNLYHVMIQMMGKNKMIEMAEEVFHDFKRDGLEPDTRAFNEMMGAYLQVDMVERAV 180

Query: 181 ETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYLDNPQKFFNDNGQKLTT 240
           ETY LM ASGCTPD+LTFKILIKNLE+FREEFA VVKK+C E+LD+P+KF  D  QKL  
Sbjct: 181 ETYELMKASGCTPDKLTFKILIKNLERFREEFAAVVKKECAEFLDSPEKFLRDVEQKL-M 240

Query: 241 KVRIL 246
           K++IL
Sbjct: 241 KLQIL 244

[Close]

BLAST of CsaV3_4G002630 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-22
Identity = 65/210 (30.95%), Postives = 112/210 (53.33%), Query Frame = 0


Query: 43  RKGSNRPLGLSRVPSNEAIQAVQSLKLA----------------KSTSKMEDVINTKLGR 102
           R  + +PL   R+ S EAIQAVQ+LK A                 S++ ++ VI +K  R
Sbjct: 492 RSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRR 551

Query: 103 LLKADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEE 162
           LLK D+   L EL RQNE  L+L+VF+ ++ E W++P +R+Y  MI +M  N ++E    
Sbjct: 552 LLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNY 611

Query: 163 VFHKLRKD-GLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL 222
           ++  ++ + GL  +   FN ++   L   + +  ++ Y  M + G  PD  +F++L+  L
Sbjct: 612 LYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

Query: 223 EKFRE-EFAVVVKKDCNEYLDNPQKFFNDN 235
           E   E   + +V++D +EY     +F  ++
Sbjct: 672 ESNGEMGLSAIVRQDAHEYYGESLEFIEED 701

[Close]

BLAST of CsaV3_4G002630 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-20
Identity = 54/177 (30.51%), Postives = 101/177 (57.06%), Query Frame = 0


Query: 34  PPPNIICGLRKGSNRPLGL----SRVPSNEAIQAVQSLK-LAKSTSKMEDVINTKLGRLL 93
           P P  +   R    RP G      ++   EA+  +  LK L +   K++  I T + RLL
Sbjct: 47  PKPFTVFVSRFHDGRPRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLL 106

Query: 94  KADLFDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVF 153
           K D+   + EL+RQ E  L++++F+ +Q +EW++PD+ +Y  +I+ + K+K ++ A  ++
Sbjct: 107 KLDMLAVIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALW 166

Query: 154 HKLRKDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL 206
            K++K+ L PD++ + E++  +L+      A+  Y  M+ S   P+EL F++L+K L
Sbjct: 167 EKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL 223

[Close]

BLAST of CsaV3_4G002630 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-17
Identity = 53/191 (27.75%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 57  SNEAIQAVQSLKLAKSTS-KMEDVINTKLGRLLKADLFDALSELQRQNELELSLQVFKFM 116
           S E + A + LK  ++ S +++  I + + RLLK+DL   L+E QRQN++ L +++++ +
Sbjct: 2   SKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 117 QNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAYLQVDM 176
           + E W+ PD+  Y  M+M++ +NK ++  ++V+  L+K+ +  D   F +++  +L  ++
Sbjct: 62  RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNEL 121

Query: 177 IERAVETYRLMIASGCTPDELTFKILIKNLEKFREEFAVVVKKDCNEYL------DNPQK 236
              A+  Y  M  S   P  L F++++K L  +  E    VK D  E        D P+ 
Sbjct: 122 PLEAMRLYGEMRESPDRPLSLPFRVILKGLVPY-PELREKVKDDFLELFPGMIVYDPPED 181

Query: 237 FFNDNGQKLTT 241
              D+ ++  T
Sbjct: 182 ICEDSDEEART 191

[Close]

BLAST of CsaV3_4G002630 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10
Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 0


Query: 37  NIICGLRKGSNRPLGLSRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLGRLLKADLFDAL 96
           +I CG R  +  PL   R+ S EAIQ++QSLK A  T     +    L RL+K+DL   L
Sbjct: 30  SIRCGPR-DNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTLRPLRRLIKSDLISVL 89

Query: 97  SELQRQNELELSLQVFKFMQNEEWFEP-DLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDG 156
            EL RQ+   L++ V   ++ E  + P DL LY  ++  + +NK  +  + +  ++    
Sbjct: 90  RELLRQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGID 149

Query: 157 LEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASG-----CTPDELTFKILIKNLEKFRE 211
              D +A  +++ A +  +  E  V  Y LM  SG        DE   ++L K L +  E
Sbjct: 150 QRSDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of CsaV3_4G002630 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 41/155 (26.45%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 53  SRVPSNEAIQAVQSLKLAKSTSKMEDVINTKLG--RLLKADLFDALSELQRQNELELSLQ 112
           +++ S +AI  +   +  KS      +I  K G  +LL   + ++L E       E ++Q
Sbjct: 82  TKIASRKAISIILRREATKS------IIEKKKGSKKLLPRTVLESLHERITALRWESAIQ 141

Query: 113 VFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLRKDGLEPDTRAFNEMMGAY 172
           VF+ ++ + W++P++ +Y  +I+++GK K  E A E+F ++  +G   +   +  ++ AY
Sbjct: 142 VFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 201

Query: 173 LQVDMIERAVETYRLMIAS-GCTPDELTFKILIKN 205
            +    + A      M +S  C PD  T+ ILIK+
Sbjct: 202 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKS 230

The following BLAST results are available for this feature:

BLAST of CsaV3_4G002630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152311.2	3.0e-133	100.00	pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus]	[more]
KGN53003.1	3.0e-133	100.00	hypothetical protein Csa_015115 [Cucumis sativus]	[more]
KAA0044536.1	1.5e-119	91.29	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008454079.1	7.2e-119	90.87	PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Cucumis m...	[more]
XP_038878176.1	4.7e-110	84.08	pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida] >...	[more]

BLAST of CsaV3_4G002630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	4.0e-19	30.51	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	2.4e-16	27.75	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
A7LN87	2.2e-09	25.56	Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4...	[more]
Q9LVW6	2.9e-09	30.56	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9FKC3	1.9e-08	26.45	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_4G002630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU23	1.5e-133	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011020 PE=4 SV=1	[more]
A0A5A7TQZ8	7.1e-120	91.29	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3CZ95	3.5e-119	90.87	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BX97	3.5e-119	90.87	pentatricopeptide repeat-containing protein At1g62350-like OS=Cucumis melo OX=36...	[more]
A0A6J1IY98	4.2e-104	80.00	pentatricopeptide repeat-containing protein At1g62350-like OS=Cucurbita maxima O...	[more]

BLAST of CsaV3_4G002630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	5.1e-22	30.95	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	2.8e-20	30.51	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	1.7e-17	27.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	2.0e-10	30.56	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G48730.1	1.3e-09	26.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 127..160 e-value: 3.3E-6 score: 24.9 coord: 162..195 e-value: 2.0E-6 score: 25.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 158..205 e-value: 2.1E-9 score: 37.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 128..156 e-value: 0.0016 score: 18.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 159..193 score: 10.446177
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 124..158 score: 10.007725
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 56..224 e-value: 2.0E-43 score: 150.2
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 7..235
None	No IPR available	PANTHER	PTHR47594:SF5	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 7..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G002630.1	CsaV3_4G002630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding