Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA
mRNA sequence
ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA
Coding sequence (CDS)
ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA
Protein sequence
MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGPRKGCKNWRPTLSAISEEEDF*
Homology
BLAST of CsaV3_1G015500 vs. NCBI nr
Match:
KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])
HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
Query: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
Query: 121 RKGCKNWRPTLSAISEEEDF 141
RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140
BLAST of CsaV3_1G015500 vs. NCBI nr
Match:
KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])
HSP 1 Score: 197.2 bits (500), Expect = 9.4e-47
Identity = 105/121 (86.78%), Postives = 110/121 (90.91%), Query Frame = 0
Query: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
MGNCIVLPSVRSPQKKL+GLKKAT LAT IV SA+ECGNDPLLK SSTKTSLQV EVR
Sbjct: 1 MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60
Query: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
NVVPCLKELENLLAS KIVYSD GAKKVKIVVT+EQFKLLL+NAKKLQ R+RLLSYTGP
Sbjct: 61 NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120
Query: 121 R 122
R
Sbjct: 121 R 121
BLAST of CsaV3_1G015500 vs. NCBI nr
Match:
XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])
HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 0
Query: 6 VLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVRNVVPC 65
VL + PQKKLR L+KAT+ SATECG DPLL DF S T+T LQV EV+N+VPC
Sbjct: 10 VLMPYQLPQKKLRELEKATD-------SATECGKDPLLLDFTSPTRTILQVGEVQNIVPC 69
Query: 66 LKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGPRKGCK 125
LKELENLLAS KI YSD AGA+KVKIVVTKEQFKLLL+NAKKLQ RHRLLSYTGPRKGC+
Sbjct: 70 LKELENLLASSKIAYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLSYTGPRKGCR 129
Query: 126 NWRPTLSAISEEEDF 141
WRPTLSAISEEEDF
Sbjct: 130 KWRPTLSAISEEEDF 137
BLAST of CsaV3_1G015500 vs. NCBI nr
Match:
KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 171.0 bits (432), Expect = 7.3e-39
Identity = 93/113 (82.30%), Postives = 100/113 (88.50%), Query Frame = 0
Query: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
MGNCIVLP VRSPQKKLRG++KAT+LATT V SATEC ND LL DF SST+TSLQV EVR
Sbjct: 1 MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDHLLHDFSSSTRTSLQVGEVR 60
Query: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHR 114
+VVPCLKELE LL S KIVYSD AGA+KVKIVVTKEQFKLLL+NAKKLQ RHR
Sbjct: 61 DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHR 112
BLAST of CsaV3_1G015500 vs. NCBI nr
Match:
XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 0
Query: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
MGNCI+LP V SP K L + ELA T+V SATE GNDPLL
Sbjct: 136 MGNCIILPCVHSPSKNL-----SPELA-TVVDSATEQGNDPLL----------------- 195
Query: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
+VVPCLKELENLL LK YS GA++VKIVVT+EQFKLLL+NAKK+Q +RLLSY GP
Sbjct: 196 DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 251
Query: 121 RKGCKNWRPTLSAISEEED 140
+G + WRP LS ISEEE+
Sbjct: 256 GRGRRKWRPMLSVISEEEE 251
BLAST of CsaV3_1G015500 vs. ExPASy TrEMBL
Match:
A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)
HSP 1 Score: 279.6 bits (714), Expect = 7.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
Query: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
Query: 121 RKGCKNWRPTLSAISEEEDF 141
RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140
BLAST of CsaV3_1G015500 vs. ExPASy TrEMBL
Match:
A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)
HSP 1 Score: 197.2 bits (500), Expect = 4.6e-47
Identity = 105/121 (86.78%), Postives = 110/121 (90.91%), Query Frame = 0
Query: 1 MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
MGNCIVLPSVRSPQKKL+GLKKAT LAT IV SA+ECGNDPLLK SSTKTSLQV EVR
Sbjct: 1 MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60
Query: 61 NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
NVVPCLKELENLLAS KIVYSD GAKKVKIVVT+EQFKLLL+NAKKLQ R+RLLSYTGP
Sbjct: 61 NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120
Query: 121 R 122
R
Sbjct: 121 R 121
BLAST of CsaV3_1G015500 vs. ExPASy TrEMBL
Match:
A0A6J5UND5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0
Query: 52 TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
T L+ EV ++VP L L L KIV+ + +K+KIVVT+EQ +LLL +A K +
Sbjct: 73 TKLEPGEVYHIVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 132
Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
+ LS +G WRP+L+ I E F
Sbjct: 133 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 164
BLAST of CsaV3_1G015500 vs. ExPASy TrEMBL
Match:
A0A5E4GL56 (PREDICTED: POPTR_0006s01910g OS=Prunus dulcis OX=3755 GN=ALMOND_2B008489 PE=4 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0
Query: 52 TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
T L+ EV ++VP L L L KIV+ + +K+KIVVT+EQ +LLL +A K +
Sbjct: 61 TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120
Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
+ LS +G WRP+L+ I E F
Sbjct: 121 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 152
BLAST of CsaV3_1G015500 vs. ExPASy TrEMBL
Match:
A0A251PDS0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0
Query: 52 TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
T L+ EV ++VP L L L KIV+ + +K+KIVVT+EQ +LLL +A K +
Sbjct: 61 TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120
Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
+ LS +G WRP+L+ I E F
Sbjct: 121 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 152
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN64995.1 | 1.4e-71 | 100.00 | hypothetical protein Csa_022837 [Cucumis sativus] | [more] |
| KAA0042344.1 | 9.4e-47 | 86.78 | hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546... | [more] |
| XP_038877793.1 | 3.6e-46 | 76.30 | uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida] | [more] |
| KAG6583721.1 | 7.3e-39 | 82.30 | hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023542404.1 | 1.0e-29 | 58.27 | uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LSY9 | 7.0e-72 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1 | [more] |
| A0A5D3CW41 | 4.6e-47 | 86.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J5UND5 | 1.3e-04 | 38.04 | Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 S... | [more] |
| A0A5E4GL56 | 2.1e-04 | 38.04 | PREDICTED: POPTR_0006s01910g OS=Prunus dulcis OX=3755 GN=ALMOND_2B008489 PE=4 SV... | [more] |
| A0A251PDS0 | 2.1e-04 | 38.04 | Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
