CsaV3_1G015500.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G015500.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 11053660 .. 11054082 (+)
Sequence length	423
RNA-Seq Expression	CsaV3_1G015500.1
Synteny	CsaV3_1G015500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

mRNA sequence

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Coding sequence (CDS)

ATGGGAAACTGCATTGTCCTGCCTTCTGTTCGGTCCCCGCAGAAAAAGCTTAGAGGGCTTAAAAAAGCCACGGAGTTAGCTACAACTATTGTCTGTTCTGCTACCGAATGTGGTAACGACCCTCTTCTGAAGGACTTTAAATCTTCAACCAAAACTAGCCTCCAAGTTTGTGAGGTTCGAAATGTTGTTCCATGCTTGAAAGAGCTCGAGAATCTTCTAGCTTCCTTGAAGATAGTCTACTCGGACGAAGCAGGAGCAAAGAAAGTGAAGATTGTGGTTACTAAGGAACAGTTTAAGTTGCTGTTGTCGAATGCAAAGAAGTTGCAATATCGACATAGATTGTTGAGCTACACAGGCCCCCGTAAAGGGTGTAAAAATTGGCGGCCAACGTTGTCTGCAATCTCGGAGGAAGAAGATTTTTGA

Protein sequence

MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGPRKGCKNWRPTLSAISEEEDF*

Homology

[Close]

BLAST of CsaV3_1G015500.1 vs. NCBI nr
Match: KGN64995.1 (hypothetical protein Csa_022837 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of CsaV3_1G015500.1 vs. NCBI nr
Match: KAA0042344.1 (hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK15468.1 hypothetical protein E5676_scaffold477G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 9.4e-47
Identity = 105/121 (86.78%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKL+GLKKAT LAT IV SA+ECGNDPLLK   SSTKTSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLAS KIVYSD  GAKKVKIVVT+EQFKLLL+NAKKLQ R+RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

[Close]

BLAST of CsaV3_1G015500.1 vs. NCBI nr
Match: XP_038877793.1 (uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 6   VLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVRNVVPC 65
           VL   + PQKKLR L+KAT+       SATECG DPLL DF S T+T LQV EV+N+VPC
Sbjct: 10  VLMPYQLPQKKLRELEKATD-------SATECGKDPLLLDFTSPTRTILQVGEVQNIVPC 69

Query: 66  LKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGPRKGCK 125
           LKELENLLAS KI YSD AGA+KVKIVVTKEQFKLLL+NAKKLQ RHRLLSYTGPRKGC+
Sbjct: 70  LKELENLLASSKIAYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHRLLSYTGPRKGCR 129

Query: 126 NWRPTLSAISEEEDF 141
            WRPTLSAISEEEDF
Sbjct: 130 KWRPTLSAISEEEDF 137

[Close]

BLAST of CsaV3_1G015500.1 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.0 bits (432), Expect = 7.3e-39
Identity = 93/113 (82.30%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLP VRSPQKKLRG++KAT+LATT V SATEC ND LL DF SST+TSLQV EVR
Sbjct: 1   MGNCIVLPCVRSPQKKLRGIEKATDLATT-VDSATECCNDHLLHDFSSSTRTSLQVGEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHR 114
           +VVPCLKELE LL S KIVYSD AGA+KVKIVVTKEQFKLLL+NAKKLQ RHR
Sbjct: 61  DVVPCLKELEKLLVSSKIVYSDGAGARKVKIVVTKEQFKLLLANAKKLQSRHR 112

[Close]

BLAST of CsaV3_1G015500.1 vs. NCBI nr
Match: XP_023542404.1 (uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-29
Identity = 81/139 (58.27%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCI+LP V SP K L     + ELA T+V SATE GNDPLL                 
Sbjct: 136 MGNCIILPCVHSPSKNL-----SPELA-TVVDSATEQGNDPLL----------------- 195

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           +VVPCLKELENLL  LK  YS   GA++VKIVVT+EQFKLLL+NAKK+Q  +RLLSY GP
Sbjct: 196 DVVPCLKELENLLVYLKTAYSSGGGAREVKIVVTREQFKLLLANAKKMQSAYRLLSYRGP 251

Query: 121 RKGCKNWRPTLSAISEEED 140
            +G + WRP LS ISEEE+
Sbjct: 256 GRGRRKWRPMLSVISEEEE 251

[Close]

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL
Match: A0A0A0LSY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR
Sbjct: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP
Sbjct: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120

Query: 121 RKGCKNWRPTLSAISEEEDF 141
           RKGCKNWRPTLSAISEEEDF
Sbjct: 121 RKGCKNWRPTLSAISEEEDF 140

[Close]

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL
Match: A0A5D3CW41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00390 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.6e-47
Identity = 105/121 (86.78%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MGNCIVLPSVRSPQKKLRGLKKATELATTIVCSATECGNDPLLKDFKSSTKTSLQVCEVR 60
           MGNCIVLPSVRSPQKKL+GLKKAT LAT IV SA+ECGNDPLLK   SSTKTSLQV EVR
Sbjct: 1   MGNCIVLPSVRSPQKKLQGLKKATGLATPIVYSASECGNDPLLKYCNSSTKTSLQVGEVR 60

Query: 61  NVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYRHRLLSYTGP 120
           NVVPCLKELENLLAS KIVYSD  GAKKVKIVVT+EQFKLLL+NAKKLQ R+RLLSYTGP
Sbjct: 61  NVVPCLKELENLLASSKIVYSDGGGAKKVKIVVTREQFKLLLANAKKLQSRYRLLSYTGP 120

Query: 121 R 122
           R
Sbjct: 121 R 121

[Close]

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL
Match: A0A6J5UND5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL +A K +  
Sbjct: 73  TKLEPGEVYHIVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 132

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 133 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 164

[Close]

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL
Match: A0A5E4GL56 (PREDICTED: POPTR_0006s01910g OS=Prunus dulcis OX=3755 GN=ALMOND_2B008489 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL +A K +  
Sbjct: 61  TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 121 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 152

[Close]

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL
Match: A0A251PDS0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 52  TSLQVCEVRNVVPCLKELENLLASLKIVYSDEAGAKKVKIVVTKEQFKLLLSNAKKLQYR 111
           T L+  EV ++VP L  L   L   KIV+ +    +K+KIVVT+EQ +LLL +A K +  
Sbjct: 61  TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 112 HRL---LSYTGPRKGCKNWRPTLSAISEEEDF 141
             +   LS     +G   WRP+L+ I E   F
Sbjct: 121 KEIGVQLSGRSGLEGSPKWRPSLAIIPEVHSF 152

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64995.1	1.4e-71	100.00	hypothetical protein Csa_022837 [Cucumis sativus]	[more]
KAA0042344.1	9.4e-47	86.78	hypothetical protein E6C27_scaffold795G00420 [Cucumis melo var. makuwa] >TYK1546...	[more]
XP_038877793.1	3.6e-46	76.30	uncharacterized protein LOC120070018 isoform X1 [Benincasa hispida]	[more]
KAG6583721.1	7.3e-39	82.30	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023542404.1	1.0e-29	58.27	uncharacterized protein LOC111802317 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G015500.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSY9	7.0e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173150 PE=4 SV=1	[more]
A0A5D3CW41	4.6e-47	86.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J5UND5	1.3e-04	38.04	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24534 PE=4 S...	[more]
A0A5E4GL56	2.1e-04	38.04	PREDICTED: POPTR_0006s01910g OS=Prunus dulcis OX=3755 GN=ALMOND_2B008489 PE=4 SV...	[more]
A0A251PDS0	2.1e-04	38.04	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1	[more]

BLAST of CsaV3_1G015500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G015500	CsaV3_1G015500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G015500.1.exon1	CsaV3_1G015500.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G015500.1.cds1	CsaV3_1G015500.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G015500.1	CsaV3_1G015500.1-protein	polypeptide