Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCATTACTGCTGTGTTATAAATTATAGTTTTTTCTTTTCCTTCAATTTCTGTTCTCTTTTATGTATGTTTTCAATTTCTTCTTGACATCATTCATTAAGTTTCACTGTTTTGGATTGGATGTATATCAGATATGTAATTGGTGATCCATTTCAGTTTCGTTTGAATTCTTTCTTATATGTAAAAATCATGAGATTTTCTTTAAGAAACCGGTCCATAATAAGAGATTTTTTTTTATTCTTGCACGAGAAACAAAGGCTAAATTAAAATAAATCCATAAGTGCATCAGGACATTCCCAATTAAGTTGACACATTGGTATAAGCACTCTCACATCATACTTTAAATTCAATTGTAGATGAATTAATAACAAAGAAGCATACTTGAGAAAATAACATGTTCACTAATCCATTGTCAACATATAATAATTTTAAATATGATCTCGTGGCAAACCATTTTTGTTAGTTTAATTTGAACAGAGACTCAAAAAACGTTGTAGTAACTTACCCATAAATATGTTCGATTCATCTAGTCTCGATTTAGCGAATCACAAAGCATTTAGAAACTTTTCATAGTCTCCTTTTAAGGTTGTGTGAATAAGAATTAATTCTGAACCTCAAGATTTATTTTCAAATAAATATAAGAGAACAATGAATGTGGTGAGTGGTGGCTGTTTTTCTGCATCCACATCTCTTGACTTTACCCTCATTATTTATTTTATATATCCACTTGGTTCATATTCAAACAAAGCTGTTAATGCATGTGTAAGGAGGGTCCCAACTATATACCACACATTGCATTTTATTCCCTTTAACTAAAGTTGGTATTTTCATTGTAATATTCTTTAAATGTCACTAAATTATAAAGTGGAGTTCAACTTCGTTTAAATCAAGTTGAAATTTTTTCTAATGGTCTGGTTGGAAGCACTTAAATTTCCATCCAACCTTTAGTCTAATTCGATAATCATTTAAGTGATTCTGTTTTTCAATTTAAATGCCAATAGATTTAGTATATATGAAAAAACATCAGATATAAACTAGAGATACAATGTTGGTTCAAAAATTATAACAAGGAAATTAACAAAATGAAACAAGCAAAGAAAGAATTGAAGAGAAGTAACACAAGATCAAAATTGGTAATTTTCAATGCTTAACACATACATATGTGAGCTATGTCCGAATAAGGCTGTTCATTAGAGTAAATGAAAAGGATTGCACATTGACAATGTTATCAGTAATCTTGATAGATGACAAGATTAGACTAACCATCACTTAGACTATTCCTAAATAGTTGAAATTTGATTGACTCTCCTTAATATAATTAGCTCCTCTGAATTATTCACTCCATCGTTGTAGTTAAACTACAACGATCTCTTCTCATAAAATGTTGTTTAACACATGACAACCACCAACCTGTCTCACAAGATCAGATCAACGCTGCAAACTCTCCAAGATCAATTTTTATATAAACAGAATATAGCACACAAAGAAGAAGAAAAACTTAAGCAGTCATTCTCTCTGAATACAAACTAAACTTCTTAAATTTCCACCAAGGATGGCGCCCACCTTATTAAGCAAAATAATCTAATTAACCACTAAAGGTAATACAATTAACACACCATAATGTCATGTAATTCATTGATTAATACAAAAAGGAATTAGTTCAATAAGAAAAGAAAATAAATGTTGAAATTAAATTAATCTAAACTTAATACATGAAATTGCATTATTAAATGTGCATGGATAGTTGAGATACATGGAATAGTTAATCACTAAATATATTGATATATAAAGAGTCACATGTATTTATTATTGATGACTTTTAGCTTGCTTTTCTATTAGTATAAAATATGTGTAAGATTTCTCATTTGTAAATAAGAAAGAAAGTAAGAAATTCAAGTTTAAGAAATATTATTCAATTTGACCAATCTTCTTTTCTTTTTTCTTGATTTTGTATTGTGAGGACTTGTTACGTTTTCAACAAGAGATATGAGAGCTTCGGTTAGATATGACTTCAAAGGGTAACATGTTGCAATCCCAACTTCCAAGGTTTAGCGGGAAGAATTTTAGTCAATATAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGTTATTGTTGAAAGAGGATACACTGAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTATTGAGTTAAGAGAAAATCGTAAGAAAGACAAGACGACTTTATTCTTCATTTATCAAGTTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTTTGCAAAGGCGACTTGGGATATTCTACAATCTACCTATCAAGGAGAAGATAAAGTAAAAATGATAAGGTTACAAGCTCTCATATCCGAATTTGATTGCATTAAAATGAAAGAAATTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATCGTCAGTAGTTTAAGATCAAATGGTGAAGAAGTGGGCGATCAAAGAGTTGTTGAAAAGAGTCTTAGAAGTATGCCAAGAAAATTTGAGCATATTGTCGTTGCAATTGAAGAATCGAAAAACTTATCTACGTTGTCTATAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTAAGATTAAAACAATTTGATGTTAATTCCGAGGAAGCTTTTCAAATGCAAACTTCATTCAGAGGCGGATCAAGGGGAAGTCGTGGCGGTCATGGAAGACGAGGAGGTGGAAGAAACTATGATAATTGA
mRNA sequence
ATGATTTTCATTACTGCTGTGTTACAAGCTCTCATATCCGAATTTGATTGCATTAAAATGAAAGAAATTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATCGTCAGTAGTTTAAGATCAAATGGTGAAGAAGTGGGCGATCAAAGAGTTGTTGAAAAGAGTCTTAGAAGTATGCCAAGAAAATTTGAGCATATTGTCGTTGCAATTGAAGAATCGAAAAACTTATCTACGTTGTCTATAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTAAGATTAAAACAATTTGATGTTAATTCCGAGGAAGCTTTTCAAATGCAAACTTCATTCAGAGGCGGATCAAGGGGAAGTCGTGGCGGTCATGGAAGACGAGGAGGTGGAAGAAACTATGATAATTGA
Coding sequence (CDS)
ATGATTTTCATTACTGCTGTGTTACAAGCTCTCATATCCGAATTTGATTGCATTAAAATGAAAGAAATTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATCGTCAGTAGTTTAAGATCAAATGGTGAAGAAGTGGGCGATCAAAGAGTTGTTGAAAAGAGTCTTAGAAGTATGCCAAGAAAATTTGAGCATATTGTCGTTGCAATTGAAGAATCGAAAAACTTATCTACGTTGTCTATAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTAAGATTAAAACAATTTGATGTTAATTCCGAGGAAGCTTTTCAAATGCAAACTTCATTCAGAGGCGGATCAAGGGGAAGTCGTGGCGGTCATGGAAGACGAGGAGGTGGAAGAAACTATGATAATTGA
Protein sequence
MIFITAVLQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHIVVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRRGGGRNYDN*
Homology
BLAST of CsGy6G017442 vs. NCBI nr
Match:
KAA0052790.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 227 bits (579), Expect = 7.99e-71
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 87 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 146
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
+VAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGHGRR
Sbjct: 147 IVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGRR 206
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 207 GGGRNYDN 214
BLAST of CsGy6G017442 vs. NCBI nr
Match:
TYK07358.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (571), Expect = 8.94e-71
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 196 GGGRNYDN 203
BLAST of CsGy6G017442 vs. NCBI nr
Match:
XP_008462665.1 (PREDICTED: uncharacterized protein LOC103500968 [Cucumis melo])
HSP 1 Score: 224 bits (571), Expect = 1.01e-70
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 196 GGGRNYDN 203
BLAST of CsGy6G017442 vs. NCBI nr
Match:
KAA0065484.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 220 bits (561), Expect = 8.81e-70
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQA+ SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQAVRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGH RR
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNLEEAFQMQTSFRGGSRGRRGGHERR 234
Query: 128 GGGRNYDN 135
G GRNYDN
Sbjct: 235 GDGRNYDN 242
BLAST of CsGy6G017442 vs. NCBI nr
Match:
KAA0041660.1 (integrase [Cucumis melo var. makuwa])
HSP 1 Score: 223 bits (567), Expect = 2.54e-68
Identity = 119/128 (92.97%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESK+LSTLSINSLMGSLQSHELRLKQFD N EEAFQMQTSFRGGSRG RGGHG R
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDDNPEEAFQMQTSFRGGSRGRRGGHGTR 234
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 235 GGGRNYDN 242
BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match:
A0A5A7UC82 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1614G00010 PE=4 SV=1)
HSP 1 Score: 227 bits (579), Expect = 3.87e-71
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 87 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 146
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
+VAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGHGRR
Sbjct: 147 IVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGRR 206
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 207 GGGRNYDN 214
BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match:
A0A5D3C874 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00770 PE=4 SV=1)
HSP 1 Score: 224 bits (571), Expect = 4.33e-71
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 196 GGGRNYDN 203
BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match:
A0A1S3CHI3 (uncharacterized protein LOC103500968 OS=Cucumis melo OX=3656 GN=LOC103500968 PE=4 SV=1)
HSP 1 Score: 224 bits (571), Expect = 4.89e-71
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 196 GGGRNYDN 203
BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match:
A0A5A7VDX5 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001870 PE=4 SV=1)
HSP 1 Score: 220 bits (561), Expect = 4.27e-70
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQA+ SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQAVRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGH RR
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNLEEAFQMQTSFRGGSRGRRGGHERR 234
Query: 128 GGGRNYDN 135
G GRNYDN
Sbjct: 235 GDGRNYDN 242
BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match:
A0A5A7TED4 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001410 PE=4 SV=1)
HSP 1 Score: 223 bits (567), Expect = 1.23e-68
Identity = 119/128 (92.97%), Postives = 121/128 (94.53%), Query Frame = 0
Query: 8 LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174
Query: 68 VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
VVAIEESK+LSTLSINSLMGSLQSHELRLKQFD N EEAFQMQTSFRGGSRG RGGHG R
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDDNPEEAFQMQTSFRGGSRGRRGGHGTR 234
Query: 128 GGGRNYDN 135
GGGRNYDN
Sbjct: 235 GGGRNYDN 242
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UC82 | 3.87e-71 | 93.75 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1614G00010 PE=... | [more] |
A0A5D3C874 | 4.33e-71 | 93.75 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00770 PE=4... | [more] |
A0A1S3CHI3 | 4.89e-71 | 93.75 | uncharacterized protein LOC103500968 OS=Cucumis melo OX=3656 GN=LOC103500968 PE=... | [more] |
A0A5A7VDX5 | 4.27e-70 | 92.19 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001870 PE=4... | [more] |
A0A5A7TED4 | 1.23e-68 | 92.97 | Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001410 PE=4... | [more] |
Match Name | E-value | Identity | Description | |