CsGy6G017442 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G017442
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionIntegrase
LocationGy14Chr6: 18177438 .. 18180176 (+)
RNA-Seq ExpressionCsGy6G017442
SyntenyCsGy6G017442
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTCATTACTGCTGTGTTATAAATTATAGTTTTTTCTTTTCCTTCAATTTCTGTTCTCTTTTATGTATGTTTTCAATTTCTTCTTGACATCATTCATTAAGTTTCACTGTTTTGGATTGGATGTATATCAGATATGTAATTGGTGATCCATTTCAGTTTCGTTTGAATTCTTTCTTATATGTAAAAATCATGAGATTTTCTTTAAGAAACCGGTCCATAATAAGAGATTTTTTTTTATTCTTGCACGAGAAACAAAGGCTAAATTAAAATAAATCCATAAGTGCATCAGGACATTCCCAATTAAGTTGACACATTGGTATAAGCACTCTCACATCATACTTTAAATTCAATTGTAGATGAATTAATAACAAAGAAGCATACTTGAGAAAATAACATGTTCACTAATCCATTGTCAACATATAATAATTTTAAATATGATCTCGTGGCAAACCATTTTTGTTAGTTTAATTTGAACAGAGACTCAAAAAACGTTGTAGTAACTTACCCATAAATATGTTCGATTCATCTAGTCTCGATTTAGCGAATCACAAAGCATTTAGAAACTTTTCATAGTCTCCTTTTAAGGTTGTGTGAATAAGAATTAATTCTGAACCTCAAGATTTATTTTCAAATAAATATAAGAGAACAATGAATGTGGTGAGTGGTGGCTGTTTTTCTGCATCCACATCTCTTGACTTTACCCTCATTATTTATTTTATATATCCACTTGGTTCATATTCAAACAAAGCTGTTAATGCATGTGTAAGGAGGGTCCCAACTATATACCACACATTGCATTTTATTCCCTTTAACTAAAGTTGGTATTTTCATTGTAATATTCTTTAAATGTCACTAAATTATAAAGTGGAGTTCAACTTCGTTTAAATCAAGTTGAAATTTTTTCTAATGGTCTGGTTGGAAGCACTTAAATTTCCATCCAACCTTTAGTCTAATTCGATAATCATTTAAGTGATTCTGTTTTTCAATTTAAATGCCAATAGATTTAGTATATATGAAAAAACATCAGATATAAACTAGAGATACAATGTTGGTTCAAAAATTATAACAAGGAAATTAACAAAATGAAACAAGCAAAGAAAGAATTGAAGAGAAGTAACACAAGATCAAAATTGGTAATTTTCAATGCTTAACACATACATATGTGAGCTATGTCCGAATAAGGCTGTTCATTAGAGTAAATGAAAAGGATTGCACATTGACAATGTTATCAGTAATCTTGATAGATGACAAGATTAGACTAACCATCACTTAGACTATTCCTAAATAGTTGAAATTTGATTGACTCTCCTTAATATAATTAGCTCCTCTGAATTATTCACTCCATCGTTGTAGTTAAACTACAACGATCTCTTCTCATAAAATGTTGTTTAACACATGACAACCACCAACCTGTCTCACAAGATCAGATCAACGCTGCAAACTCTCCAAGATCAATTTTTATATAAACAGAATATAGCACACAAAGAAGAAGAAAAACTTAAGCAGTCATTCTCTCTGAATACAAACTAAACTTCTTAAATTTCCACCAAGGATGGCGCCCACCTTATTAAGCAAAATAATCTAATTAACCACTAAAGGTAATACAATTAACACACCATAATGTCATGTAATTCATTGATTAATACAAAAAGGAATTAGTTCAATAAGAAAAGAAAATAAATGTTGAAATTAAATTAATCTAAACTTAATACATGAAATTGCATTATTAAATGTGCATGGATAGTTGAGATACATGGAATAGTTAATCACTAAATATATTGATATATAAAGAGTCACATGTATTTATTATTGATGACTTTTAGCTTGCTTTTCTATTAGTATAAAATATGTGTAAGATTTCTCATTTGTAAATAAGAAAGAAAGTAAGAAATTCAAGTTTAAGAAATATTATTCAATTTGACCAATCTTCTTTTCTTTTTTCTTGATTTTGTATTGTGAGGACTTGTTACGTTTTCAACAAGAGATATGAGAGCTTCGGTTAGATATGACTTCAAAGGGTAACATGTTGCAATCCCAACTTCCAAGGTTTAGCGGGAAGAATTTTAGTCAATATAGTATTCAAATGAAAGTGTTATATGGCTCTCAAGAATTGTGGGTTATTGTTGAAAGAGGATACACTGAAGTTGAGAATCAGAGTGAGCTCACAAATCAACAACTTATTGAGTTAAGAGAAAATCGTAAGAAAGACAAGACGACTTTATTCTTCATTTATCAAGTTGTTGATGAATTTATTTTCGAGAGAATTTCAACAGCTACTTTTGCAAAGGCGACTTGGGATATTCTACAATCTACCTATCAAGGAGAAGATAAAGTAAAAATGATAAGGTTACAAGCTCTCATATCCGAATTTGATTGCATTAAAATGAAAGAAATTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATCGTCAGTAGTTTAAGATCAAATGGTGAAGAAGTGGGCGATCAAAGAGTTGTTGAAAAGAGTCTTAGAAGTATGCCAAGAAAATTTGAGCATATTGTCGTTGCAATTGAAGAATCGAAAAACTTATCTACGTTGTCTATAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTAAGATTAAAACAATTTGATGTTAATTCCGAGGAAGCTTTTCAAATGCAAACTTCATTCAGAGGCGGATCAAGGGGAAGTCGTGGCGGTCATGGAAGACGAGGAGGTGGAAGAAACTATGATAATTGA

mRNA sequence

ATGATTTTCATTACTGCTGTGTTACAAGCTCTCATATCCGAATTTGATTGCATTAAAATGAAAGAAATTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATCGTCAGTAGTTTAAGATCAAATGGTGAAGAAGTGGGCGATCAAAGAGTTGTTGAAAAGAGTCTTAGAAGTATGCCAAGAAAATTTGAGCATATTGTCGTTGCAATTGAAGAATCGAAAAACTTATCTACGTTGTCTATAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTAAGATTAAAACAATTTGATGTTAATTCCGAGGAAGCTTTTCAAATGCAAACTTCATTCAGAGGCGGATCAAGGGGAAGTCGTGGCGGTCATGGAAGACGAGGAGGTGGAAGAAACTATGATAATTGA

Coding sequence (CDS)

ATGATTTTCATTACTGCTGTGTTACAAGCTCTCATATCCGAATTTGATTGCATTAAAATGAAAGAAATTGAAACTATTGAAGAATTTTTCAATCGTATTCTTGTAATCGTCAGTAGTTTAAGATCAAATGGTGAAGAAGTGGGCGATCAAAGAGTTGTTGAAAAGAGTCTTAGAAGTATGCCAAGAAAATTTGAGCATATTGTCGTTGCAATTGAAGAATCGAAAAACTTATCTACGTTGTCTATAAATAGCTTGATGGGTTCTCTTCAATCCCATGAGCTAAGATTAAAACAATTTGATGTTAATTCCGAGGAAGCTTTTCAAATGCAAACTTCATTCAGAGGCGGATCAAGGGGAAGTCGTGGCGGTCATGGAAGACGAGGAGGTGGAAGAAACTATGATAATTGA

Protein sequence

MIFITAVLQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHIVVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRRGGGRNYDN*
Homology
BLAST of CsGy6G017442 vs. NCBI nr
Match: KAA0052790.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 7.99e-71
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 87  LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 146

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           +VAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGHGRR
Sbjct: 147 IVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGRR 206

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 207 GGGRNYDN 214

BLAST of CsGy6G017442 vs. NCBI nr
Match: TYK07358.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (571), Expect = 8.94e-71
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76  LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR  RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 196 GGGRNYDN 203

BLAST of CsGy6G017442 vs. NCBI nr
Match: XP_008462665.1 (PREDICTED: uncharacterized protein LOC103500968 [Cucumis melo])

HSP 1 Score: 224 bits (571), Expect = 1.01e-70
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76  LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR  RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 196 GGGRNYDN 203

BLAST of CsGy6G017442 vs. NCBI nr
Match: KAA0065484.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 8.81e-70
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQA+ SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQAVRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGH RR
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNLEEAFQMQTSFRGGSRGRRGGHERR 234

Query: 128 GGGRNYDN 135
           G GRNYDN
Sbjct: 235 GDGRNYDN 242

BLAST of CsGy6G017442 vs. NCBI nr
Match: KAA0041660.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (567), Expect = 2.54e-68
Identity = 119/128 (92.97%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESK+LSTLSINSLMGSLQSHELRLKQFD N EEAFQMQTSFRGGSRG RGGHG R
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDDNPEEAFQMQTSFRGGSRGRRGGHGTR 234

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 235 GGGRNYDN 242

BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match: A0A5A7UC82 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1614G00010 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 3.87e-71
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 87  LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 146

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           +VAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGHGRR
Sbjct: 147 IVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRGRRGGHGRR 206

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 207 GGGRNYDN 214

BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match: A0A5D3C874 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00770 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 4.33e-71
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76  LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR  RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 196 GGGRNYDN 203

BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match: A0A1S3CHI3 (uncharacterized protein LOC103500968 OS=Cucumis melo OX=3656 GN=LOC103500968 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 4.89e-71
Identity = 120/128 (93.75%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 76  LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 135

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESKNLS LSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSR  RGGHGRR
Sbjct: 136 VVAIEESKNLSMLSINSLMGSLQSHELRLKQFDVNPEEAFQMQTSFRGGSRERRGGHGRR 195

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 196 GGGRNYDN 203

BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match: A0A5A7VDX5 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001870 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 4.27e-70
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQA+ SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQAVRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESK+LSTLSINSLMGSLQSHELRLKQFDVN EEAFQMQTSFRGGSRG RGGH RR
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDVNLEEAFQMQTSFRGGSRGRRGGHERR 234

Query: 128 GGGRNYDN 135
           G GRNYDN
Sbjct: 235 GDGRNYDN 242

BLAST of CsGy6G017442 vs. ExPASy TrEMBL
Match: A0A5A7TED4 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001410 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 1.23e-68
Identity = 119/128 (92.97%), Postives = 121/128 (94.53%), Query Frame = 0

Query: 8   LQALISEFDCIKMKEIETIEEFFNRILVIVSSLRSNGEEVGDQRVVEKSLRSMPRKFEHI 67
           LQAL SEFDCIKMKE ETIEEFFNRILVIV+SLRSNGEEVGDQRVVEK LRSMPRKFEHI
Sbjct: 115 LQALRSEFDCIKMKETETIEEFFNRILVIVNSLRSNGEEVGDQRVVEKILRSMPRKFEHI 174

Query: 68  VVAIEESKNLSTLSINSLMGSLQSHELRLKQFDVNSEEAFQMQTSFRGGSRGSRGGHGRR 127
           VVAIEESK+LSTLSINSLMGSLQSHELRLKQFD N EEAFQMQTSFRGGSRG RGGHG R
Sbjct: 175 VVAIEESKDLSTLSINSLMGSLQSHELRLKQFDDNPEEAFQMQTSFRGGSRGRRGGHGTR 234

Query: 128 GGGRNYDN 135
           GGGRNYDN
Sbjct: 235 GGGRNYDN 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0052790.17.99e-7193.75integrase [Cucumis melo var. makuwa][more]
TYK07358.18.94e-7193.75integrase [Cucumis melo var. makuwa][more]
XP_008462665.11.01e-7093.75PREDICTED: uncharacterized protein LOC103500968 [Cucumis melo][more]
KAA0065484.18.81e-7092.19integrase [Cucumis melo var. makuwa][more]
KAA0041660.12.54e-6892.97integrase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7UC823.87e-7193.75Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1614G00010 PE=... [more]
A0A5D3C8744.33e-7193.75Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00770 PE=4... [more]
A0A1S3CHI34.89e-7193.75uncharacterized protein LOC103500968 OS=Cucumis melo OX=3656 GN=LOC103500968 PE=... [more]
A0A5A7VDX54.27e-7092.19Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001870 PE=4... [more]
A0A5A7TED41.23e-6892.97Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001410 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 10..98
e-value: 1.2E-13
score: 51.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..135
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 6..131
NoneNo IPR availablePANTHERPTHR34222:SF30SUBFAMILY NOT NAMEDcoord: 6..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G017442.1CsGy6G017442.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding