CsGy6G013000 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G013000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 11235699 .. 11236159 (+)
RNA-Seq Expression	CsGy6G013000
Synteny	CsGy6G013000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCCGTGAAGACGCTTCGCGAACGCCAGATCTCCCCTCGGTCAAAATTACATTCGCCATTGATCTGTCTGTAAATCAGATCTGACGCGATCGCCTCCATCCAAAAATCCACGCGTAGGTCTCCTGCAGATCAGACGAACCCAGACGATTGCGCGTTAACCTTCGCCCGCATCAGTTCACAACTCTGATTTCGTCCTATAATCAGATTAGACGCGTTCGTCCCCGTCCAATAACCGAGGTCCGACGAACCCAGCTCCAATTTCGTCCGATAATCAACTCCGATCTCGTCCGATTCACTCTCAGCTCCGATTCACTCTCAGTTTCGATTCACGTCCGTTTTCATCCGAGTCTGTTCGCAGATCCGATTAAAGTTTTGCCTTCATTCACATCAGATCTGAAGACATCCTGCCGTGAAGACACTCACCTGTTGGTAACCCACTGCCGTGAAGTAACATAA

mRNA sequence

ATGCCTGCCGTGAAGACGCTTCGCGAACGCCAGATCTCCCCTCGGTCAAAATTACATTCGCCATTGATCTGTCTATCAGACGAACCCAGACGATTGCGCGTTAACCTTCGCCCGCATCAGTTCACAACTCTGATTTCGTCCTATAATCAGATTAGACGCGTTCGTCCCCGTCCAATAACCGAGGTCCGACGAACCCAGCTCCAATTTCGTCCGATAATCAACTCCGATCTCGTCCGATTCACTCTCAGCTCCGATTCACTCTCAGTTTCGATTCACGTCCGTTTTCATCCGAGTCTGTTCGCAGATCCGATTAAAGTTTTGCCTTCATTCACATCAGATCTGAAGACATCCTGCCGTGAAGACACTCACCTGTTGGTAACCCACTGCCGTGAAGTAACATAA

Coding sequence (CDS)

ATGCCTGCCGTGAAGACGCTTCGCGAACGCCAGATCTCCCCTCGGTCAAAATTACATTCGCCATTGATCTGTCTATCAGACGAACCCAGACGATTGCGCGTTAACCTTCGCCCGCATCAGTTCACAACTCTGATTTCGTCCTATAATCAGATTAGACGCGTTCGTCCCCGTCCAATAACCGAGGTCCGACGAACCCAGCTCCAATTTCGTCCGATAATCAACTCCGATCTCGTCCGATTCACTCTCAGCTCCGATTCACTCTCAGTTTCGATTCACGTCCGTTTTCATCCGAGTCTGTTCGCAGATCCGATTAAAGTTTTGCCTTCATTCACATCAGATCTGAAGACATCCTGCCGTGAAGACACTCACCTGTTGGTAACCCACTGCCGTGAAGTAACATAA

Protein sequence

MPAVKTLRERQISPRSKLHSPLICLSDEPRRLRVNLRPHQFTTLISSYNQIRRVRPRPITEVRRTQLQFRPIINSDLVRFTLSSDSLSVSIHVRFHPSLFADPIKVLPSFTSDLKTSCREDTHLLVTHCREVT*

Homology

[Close]

BLAST of CsGy6G013000 vs. NCBI nr
Match: KAE8646922.1 (hypothetical protein Csa_020733, partial [Cucumis sativus])

HSP 1 Score: 165 bits (418), Expect = 1.79e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 51  IRRVRPRPITEVRRTQLQFRPIINSDLVRFTLSSDSLSVSIHVRFHPSLFADPIKVLPSF 110
           IRRVRPRPITEVRRTQLQFRPIINSDLVRFTLSSDSLSVSIHVRFHPSLFADPIKVLPSF
Sbjct: 1   IRRVRPRPITEVRRTQLQFRPIINSDLVRFTLSSDSLSVSIHVRFHPSLFADPIKVLPSF 60

Query: 111 TSDLKTSCREDTHLLVTHCREVT 133
           TSDLKTSCREDTHLLVTHCREVT
Sbjct: 61  TSDLKTSCREDTHLLVTHCREVT 83

[Close]

BLAST of CsGy6G013000 vs. NCBI nr
Match: KAE8651893.1 (hypothetical protein Csa_006446 [Cucumis sativus])

HSP 1 Score: 121 bits (304), Expect = 9.93e-31
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 24  CLSDEPRRLRVNLRPHQFTTLISSYNQIRRVRPRPITEVRRTQLQFRPIINSDLVRFTLS 83
           C SDEPRRLRV+LRPHQFTTLISS NQIRRV PRPIT+VRRTQLQFRPIINSDLVRFTLS
Sbjct: 182 CRSDEPRRLRVSLRPHQFTTLISSDNQIRRVHPRPITQVRRTQLQFRPIINSDLVRFTLS 241

Query: 84  SDSLSVSIHVRFHPSLFAD 102
           SDSLS  IH +   +L  D
Sbjct: 242 SDSLSAPIHSQLRFTLSFD 260

The following BLAST results are available for this feature:

BLAST of CsGy6G013000 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G013000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646922.1	1.79e-50	100.00	hypothetical protein Csa_020733, partial [Cucumis sativus]	[more]
KAE8651893.1	9.93e-31	81.01	hypothetical protein Csa_006446 [Cucumis sativus]	[more]

BLAST of CsGy6G013000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy6G013000 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G013000.1	CsGy6G013000.1	mRNA