Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATAATCTTGAGAGAAACAAAAGAGTTCAGTTCAGCTATCAATTTCTCTCTATATATAACCCTTTCCCATTTCATCCCGCTGTCCACTGCTAGCAGCTTTTTCCCTCTCCCAAGTTTACATTTTCAAAAGAAAAAAAATTCCAATTCCAATTCCAATTCCAATTCAGATTCAAAATCTATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCAAGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAGTCGAACTCTTAGTTTCTGTTTCCACTTTTTCTTTACTGATTATGAGTACGTGTGAGAGTGATTCTTGAATGTTTTATAATCATTTTTTGTGTCATAAAGTGTTCTAAACCTATAGTTTTTGAATGAATAGAAGCAAGTGTTAAGAGTGATCTTGAGCATACTTAAAGAGATCATTTTAACTATTTAAAAATCACTCTAAAAGCTATTCTTTTTTCCTCTGTCTATATATTAATATTAATTGATTAATAGTATTCGATTGACT
mRNA sequence
ATTATAATCTTGAGAGAAACAAAAGAGTTCAGTTCAGCTATCAATTTCTCTCTATATATAACCCTTTCCCATTTCATCCCGCTGTCCACTGCTAGCAGCTTTTTCCCTCTCCCAAGTTTACATTTTCAAAAGAAAAAAAATTCCAATTCCAATTCCAATTCCAATTCAGATTCAAAATCTATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCAAGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAGTCGAACTCTTAGTTTCTGTTTCCACTTTTTCTTTACTGATTATGAGTACGTGTGAGAGTGATTCTTGAATGTTTTATAATCATTTTTTGTGTCATAAAGTGTTCTAAACCTATAGTTTTTGAATGAATAGAAGCAAGTGTTAAGAGTGATCTTGAGCATACTTAAAGAGATCATTTTAACTATTTAAAAATCACTCTAAAAGCTATTCTTTTTTCCTCTGTCTATATATTAATATTAATTGATTAATAGTATTCGATTGACT
Coding sequence (CDS)
ATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCAAGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAG
Protein sequence
MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN*
Homology
BLAST of CsGy6G010245 vs. NCBI nr
Match:
KGN46704.1 (hypothetical protein Csa_020980 [Cucumis sativus])
HSP 1 Score: 201 bits (510), Expect = 9.94e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI
Sbjct: 1 MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
Query: 61 RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN
Sbjct: 61 RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
BLAST of CsGy6G010245 vs. NCBI nr
Match:
XP_023532519.1 (uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 120 bits (300), Expect = 1.54e-32
Identity = 69/106 (65.09%), Postives = 80/106 (75.47%), Query Frame = 0
Query: 3 AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKE---EAVQGPVVAEGP 62
AVVR L+ L+L GM+ QLTAA+ EAP V TA+ FFG++IG E E QG VA GP
Sbjct: 15 AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGAEIGMEMEMENQQG--VAAGP 74
Query: 63 AIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
IRRLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRKP+ V
Sbjct: 75 EIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKPDPVK 118
BLAST of CsGy6G010245 vs. NCBI nr
Match:
XP_022947872.1 (uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothetical protein SDJN03_02152, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 119 bits (297), Expect = 2.91e-32
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0
Query: 3 AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQG-PVVAEGPAIR 62
AVVR L+ L+L GM+ QLTAA+ EAP V TA+ F +IGKE ++ P VA GP IR
Sbjct: 2 AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIR 61
Query: 63 RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
RLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK + V
Sbjct: 62 RLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK 104
BLAST of CsGy6G010245 vs. NCBI nr
Match:
KAG7034949.1 (hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 119 bits (297), Expect = 1.09e-31
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0
Query: 3 AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQG-PVVAEGPAIR 62
AVVR L+ L+L GM+ QLTAA+ EAP V TA+ F +IGKE ++ P VA GP IR
Sbjct: 47 AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIR 106
Query: 63 RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
RLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK + V
Sbjct: 107 RLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK 149
BLAST of CsGy6G010245 vs. NCBI nr
Match:
KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 85.9 bits (211), Expect = 3.13e-19
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 0
Query: 6 RLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGK 65
+++L+SLILA + IQ A+ A + + + + + V+GP +AE P IRRLGK
Sbjct: 3 KISLLSLILAQILLIQAMAST---ATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGK 62
Query: 66 HHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
HH SVAGG V+IG L TAVFA VFCYIRVTRK + V+
Sbjct: 63 HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVD 98
BLAST of CsGy6G010245 vs. ExPASy TrEMBL
Match:
A0A0A0KCY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1)
HSP 1 Score: 201 bits (510), Expect = 4.81e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI
Sbjct: 1 MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
Query: 61 RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN
Sbjct: 61 RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
BLAST of CsGy6G010245 vs. ExPASy TrEMBL
Match:
A0A6J1G7L7 (uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC111451632 PE=4 SV=1)
HSP 1 Score: 119 bits (297), Expect = 1.41e-32
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0
Query: 3 AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQG-PVVAEGPAIR 62
AVVR L+ L+L GM+ QLTAA+ EAP V TA+ F +IGKE ++ P VA GP IR
Sbjct: 2 AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIR 61
Query: 63 RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
RLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK + V
Sbjct: 62 RLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK 104
BLAST of CsGy6G010245 vs. ExPASy TrEMBL
Match:
W9R8T9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008734 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 7.83e-17
Identity = 50/110 (45.45%), Postives = 60/110 (54.55%), Query Frame = 0
Query: 6 RLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKE------------EAVQGPV 65
R+ L+ LIL G+ IQ AA + P S++ + EA
Sbjct: 3 RIYLLGLILVGILVIQTLAAKSELNPADQVQSGARSRVADQPVSSAEERSEGKEASDDEN 62
Query: 66 VAEGPAIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHV 103
AE PAIRRLGKHH S+AGG V+IG L TA+FA VFCYIRVTRK N V
Sbjct: 63 EAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYIRVTRKRNSV 112
BLAST of CsGy6G010245 vs. ExPASy TrEMBL
Match:
A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 2.43e-16
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 0
Query: 9 LMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHF 68
L LI+ +F IQ ++ A + L + ++ +G VAE P IRRLGKHH
Sbjct: 7 LFCLIVGEIFLIQAITTSI--ATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHG 66
Query: 69 HTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
S+AGG V+IG L TAVFA VFCYIRVTRK + V+
Sbjct: 67 DKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVD 100
BLAST of CsGy6G010245 vs. ExPASy TrEMBL
Match:
A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 4.75e-16
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 0
Query: 9 LMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHF 68
L LI+A + IQ A A D L + ++ +G VAE P IRRLGKHH
Sbjct: 7 LFCLIVAEILLIQ---AMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGKHHG 66
Query: 69 HTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
SVAGG V+IG L TA+FA VFCYIRVTRK + V+
Sbjct: 67 DKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVD 99
BLAST of CsGy6G010245 vs. TAIR 10
Match:
AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 50.4 bits (119), Expect = 9.9e-07
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0
Query: 47 EAVQGPVVAEGPAIRRLGKHH--FHTSVAGGRVLIGSLATAVFAIVFCYIRVTR--KPNH 103
E + P V+ R G HH SVAGG V++G LAT +VFCYIR TR KPN+
Sbjct: 41 EEAEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHKPNY 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KGN46704.1 | 9.94e-65 | 100.00 | hypothetical protein Csa_020980 [Cucumis sativus] | [more] |
XP_023532519.1 | 1.54e-32 | 65.09 | uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo] | [more] |
XP_022947872.1 | 2.91e-32 | 63.11 | uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothet... | [more] |
KAG7034949.1 | 1.09e-31 | 63.11 | hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
KAG7011935.1 | 3.13e-19 | 49.49 | hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KCY0 | 4.81e-65 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1 | [more] |
A0A6J1G7L7 | 1.41e-32 | 63.11 | uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC1114516... | [more] |
W9R8T9 | 7.83e-17 | 45.45 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008734 PE=4 SV=1 | [more] |
A0A0A0K3N0 | 2.43e-16 | 46.88 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1 | [more] |
A0A5D3C590 | 4.75e-16 | 48.96 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT3G09280.1 | 9.9e-07 | 46.67 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |