CsGy6G010245.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G010245.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Xyloglucan endotransglucosylase/hydrolase protein 9
Location	Gy14Chr6: 8707872 .. 8708628 (+)
Sequence length	757
RNA-Seq Expression	CsGy6G010245.1
Synteny	CsGy6G010245.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATAATCTTGAGAGAAACAAAAGAGTTCAGTTCAGCTATCAATTTCTCTCTATATATAACCCTTTCCCATTTCATCCCGCTGTCCACTGCTAGCAGCTTTTTCCCTCTCCCAAGTTTACATTTTCAAAAGAAAAAAAATTCCAATTCCAATTCCAATTCCAATTCAGATTCAAAATCTATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCAAGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAGTCGAACTCTTAGTTTCTGTTTCCACTTTTTCTTTACTGATTATGAGTACGTGTGAGAGTGATTCTTGAATGTTTTATAATCATTTTTTGTGTCATAAAGTGTTCTAAACCTATAGTTTTTGAATGAATAGAAGCAAGTGTTAAGAGTGATCTTGAGCATACTTAAAGAGATCATTTTAACTATTTAAAAATCACTCTAAAAGCTATTCTTTTTTCCTCTGTCTATATATTAATATTAATTGATTAATAGTATTCGATTGACT

mRNA sequence

ATTATAATCTTGAGAGAAACAAAAGAGTTCAGTTCAGCTATCAATTTCTCTCTATATATAACCCTTTCCCATTTCATCCCGCTGTCCACTGCTAGCAGCTTTTTCCCTCTCCCAAGTTTACATTTTCAAAAGAAAAAAAATTCCAATTCCAATTCCAATTCCAATTCAGATTCAAAATCTATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCAAGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAGTCGAACTCTTAGTTTCTGTTTCCACTTTTTCTTTACTGATTATGAGTACGTGTGAGAGTGATTCTTGAATGTTTTATAATCATTTTTTGTGTCATAAAGTGTTCTAAACCTATAGTTTTTGAATGAATAGAAGCAAGTGTTAAGAGTGATCTTGAGCATACTTAAAGAGATCATTTTAACTATTTAAAAATCACTCTAAAAGCTATTCTTTTTTCCTCTGTCTATATATTAATATTAATTGATTAATAGTATTCGATTGACT

Coding sequence (CDS)

ATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCAAGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAG

Protein sequence

MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN*

Homology

[Close]

BLAST of CsGy6G010245.1 vs. NCBI nr
Match: KGN46704.1 (hypothetical protein Csa_020980 [Cucumis sativus])

HSP 1 Score: 201 bits (510), Expect = 9.94e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
           MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI
Sbjct: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60

Query: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
           RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN
Sbjct: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of CsGy6G010245.1 vs. NCBI nr
Match: XP_023532519.1 (uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120 bits (300), Expect = 1.54e-32
Identity = 69/106 (65.09%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 3   AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKE---EAVQGPVVAEGP 62
           AVVR  L+ L+L GM+  QLTAA+  EAP V TA+ FFG++IG E   E  QG  VA GP
Sbjct: 15  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGAEIGMEMEMENQQG--VAAGP 74

Query: 63  AIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
            IRRLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRKP+ V 
Sbjct: 75  EIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKPDPVK 118

[Close]

BLAST of CsGy6G010245.1 vs. NCBI nr
Match: XP_022947872.1 (uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothetical protein SDJN03_02152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119 bits (297), Expect = 2.91e-32
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 3   AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQG-PVVAEGPAIR 62
           AVVR  L+ L+L GM+  QLTAA+  EAP V TA+ F  +IGKE  ++  P VA GP IR
Sbjct: 2   AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIR 61

Query: 63  RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
           RLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK + V 
Sbjct: 62  RLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK 104

[Close]

BLAST of CsGy6G010245.1 vs. NCBI nr
Match: KAG7034949.1 (hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (297), Expect = 1.09e-31
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 3   AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQG-PVVAEGPAIR 62
           AVVR  L+ L+L GM+  QLTAA+  EAP V TA+ F  +IGKE  ++  P VA GP IR
Sbjct: 47  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIR 106

Query: 63  RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
           RLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK + V 
Sbjct: 107 RLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK 149

[Close]

BLAST of CsGy6G010245.1 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 3.13e-19
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 6   RLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGK 65
           +++L+SLILA +  IQ  A+    A    + +    +  + + V+GP +AE P IRRLGK
Sbjct: 3   KISLLSLILAQILLIQAMAST---ATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGK 62

Query: 66  HHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
           HH   SVAGG V+IG L TAVFA VFCYIRVTRK + V+
Sbjct: 63  HHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVD 98

[Close]

BLAST of CsGy6G010245.1 vs. ExPASy TrEMBL
Match: A0A0A0KCY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 201 bits (510), Expect = 4.81e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
           MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI
Sbjct: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60

Query: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
           RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN
Sbjct: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of CsGy6G010245.1 vs. ExPASy TrEMBL
Match: A0A6J1G7L7 (uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC111451632 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 1.41e-32
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 3   AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQG-PVVAEGPAIR 62
           AVVR  L+ L+L GM+  QLTAA+  EAP V TA+ F  +IGKE  ++  P VA GP IR
Sbjct: 2   AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIR 61

Query: 63  RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
           RLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK + V 
Sbjct: 62  RLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK 104

[Close]

BLAST of CsGy6G010245.1 vs. ExPASy TrEMBL
Match: W9R8T9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008734 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.83e-17
Identity = 50/110 (45.45%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 6   RLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKE------------EAVQGPV 65
           R+ L+ LIL G+  IQ  AA  +  P         S++  +            EA     
Sbjct: 3   RIYLLGLILVGILVIQTLAAKSELNPADQVQSGARSRVADQPVSSAEERSEGKEASDDEN 62

Query: 66  VAEGPAIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHV 103
            AE PAIRRLGKHH   S+AGG V+IG L TA+FA VFCYIRVTRK N V
Sbjct: 63  EAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYIRVTRKRNSV 112

[Close]

BLAST of CsGy6G010245.1 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.43e-16
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 9   LMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHF 68
           L  LI+  +F IQ    ++  A   +  L    +  ++   +G  VAE P IRRLGKHH 
Sbjct: 7   LFCLIVGEIFLIQAITTSI--ATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHG 66

Query: 69  HTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
             S+AGG V+IG L TAVFA VFCYIRVTRK + V+
Sbjct: 67  DKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVD 100

[Close]

BLAST of CsGy6G010245.1 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.75e-16
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 9   LMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHF 68
           L  LI+A +  IQ   A    A   D  L    +  ++   +G  VAE P IRRLGKHH 
Sbjct: 7   LFCLIVAEILLIQ---AMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGKHHG 66

Query: 69  HTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104
             SVAGG V+IG L TA+FA VFCYIRVTRK + V+
Sbjct: 67  DKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVD 99

[Close]

BLAST of CsGy6G010245.1 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.9e-07
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 47  EAVQGPVVAEGPAIRRLGKHH--FHTSVAGGRVLIGSLATAVFAIVFCYIRVTR--KPNH 103
           E  + P V+      R G HH     SVAGG V++G LAT    +VFCYIR TR  KPN+
Sbjct: 41  EEAEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHKPNY 100

The following BLAST results are available for this feature:

BLAST of CsGy6G010245.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G010245.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46704.1	9.94e-65	100.00	hypothetical protein Csa_020980 [Cucumis sativus]	[more]
XP_023532519.1	1.54e-32	65.09	uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]	[more]
XP_022947872.1	2.91e-32	63.11	uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothet...	[more]
KAG7034949.1	1.09e-31	63.11	hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7011935.1	3.13e-19	49.49	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsGy6G010245.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY0	4.81e-65	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1	[more]
A0A6J1G7L7	1.41e-32	63.11	uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
W9R8T9	7.83e-17	45.45	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008734 PE=4 SV=1	[more]
A0A0A0K3N0	2.43e-16	46.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A5D3C590	4.75e-16	48.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy6G010245.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	9.9e-07	46.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 3..102
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 3..102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G010245	CsGy6G010245	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G010245.1.utr5p1	CsGy6G010245.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G010245.1.exon1	CsGy6G010245.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy6G010245.1	cds.CsGy6G010245.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G010245.1.utr3p1	CsGy6G010245.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G010245.1	CsGy6G010245.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane