Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA
mRNA sequence
ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA
Coding sequence (CDS)
ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA
Protein sequence
MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE*
Homology
BLAST of CsGy5G018345 vs. NCBI nr
Match:
KGN51420.1 (hypothetical protein Csa_008540 [Cucumis sativus])
HSP 1 Score: 192 bits (489), Expect = 2.46e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME
Sbjct: 1 MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
Query: 61 DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE
Sbjct: 61 DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
BLAST of CsGy5G018345 vs. NCBI nr
Match:
KAE8646926.1 (hypothetical protein Csa_020807 [Cucumis sativus])
HSP 1 Score: 73.6 bits (179), Expect = 2.22e-13
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0
Query: 45 QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104
+V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 56 KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 115
Query: 105 TMKKKKE 110
MK+K+E
Sbjct: 116 MMKEKRE 122
BLAST of CsGy5G018345 vs. NCBI nr
Match:
KAA0047864.1 (hypothetical protein E6C27_scaffold133G001330 [Cucumis melo var. makuwa])
HSP 1 Score: 51.2 bits (121), Expect = 1.14e-04
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 7 LKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIR 66
LK+ AGKVL+G +E ++ +P Q VMK VE+L + K + +K + ER +
Sbjct: 75 LKHGAGKVLVGSEEARGNEDIQVPLQVLDKVMKFVEELLEEKRKKIDATKKKKVEVERRK 134
Query: 67 KKKEEER------ALCEERARKEEERIKEDEERRNRE 97
K++E+E+ AL E+ AR+EE+R+KEDEER+NRE
Sbjct: 135 KRREKEKKERKGKALREQWARREEQRLKEDEERQNRE 171
BLAST of CsGy5G018345 vs. ExPASy TrEMBL
Match:
A0A0A0KP73 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1)
HSP 1 Score: 192 bits (489), Expect = 1.19e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME
Sbjct: 1 MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
Query: 61 DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE
Sbjct: 61 DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
BLAST of CsGy5G018345 vs. ExPASy TrEMBL
Match:
A0A0A0KDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 1.16e-13
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0
Query: 45 QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104
+V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 22 KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 81
Query: 105 TMKKKKE 110
MK+K+E
Sbjct: 82 MMKEKRE 88
BLAST of CsGy5G018345 vs. ExPASy TrEMBL
Match:
A0A5A7TXX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001330 PE=4 SV=1)
HSP 1 Score: 51.2 bits (121), Expect = 5.54e-05
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 0
Query: 7 LKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIR 66
LK+ AGKVL+G +E ++ +P Q VMK VE+L + K + +K + ER +
Sbjct: 75 LKHGAGKVLVGSEEARGNEDIQVPLQVLDKVMKFVEELLEEKRKKIDATKKKKVEVERRK 134
Query: 67 KKKEEER------ALCEERARKEEERIKEDEERRNRE 97
K++E+E+ AL E+ AR+EE+R+KEDEER+NRE
Sbjct: 135 KRREKEKKERKGKALREQWARREEQRLKEDEERQNRE 171
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN51420.1 | 2.46e-61 | 100.00 | hypothetical protein Csa_008540 [Cucumis sativus] | [more] |
| KAE8646926.1 | 2.22e-13 | 74.63 | hypothetical protein Csa_020807 [Cucumis sativus] | [more] |
| KAA0047864.1 | 1.14e-04 | 42.27 | hypothetical protein E6C27_scaffold133G001330 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KP73 | 1.19e-61 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1 | [more] |
| A0A0A0KDX1 | 1.16e-13 | 74.63 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1 | [more] |
| A0A5A7TXX4 | 5.54e-05 | 42.27 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
