CsGy5G018345.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G018345.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 24607664 .. 24607996 (+)
Sequence length	333
RNA-Seq Expression	CsGy5G018345.1
Synteny	CsGy5G018345.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA

mRNA sequence

ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA

Coding sequence (CDS)

ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA

Protein sequence

MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE*

Homology

[Close]

BLAST of CsGy5G018345.1 vs. NCBI nr
Match: KGN51420.1 (hypothetical protein Csa_008540 [Cucumis sativus])

HSP 1 Score: 192 bits (489), Expect = 2.46e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
           MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME
Sbjct: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60

Query: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
           DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE
Sbjct: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110

[Close]

BLAST of CsGy5G018345.1 vs. NCBI nr
Match: KAE8646926.1 (hypothetical protein Csa_020807 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.22e-13
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 45  QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104
           +V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 56  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 115

Query: 105 TMKKKKE 110
            MK+K+E
Sbjct: 116 MMKEKRE 122

[Close]

BLAST of CsGy5G018345.1 vs. NCBI nr
Match: KAA0047864.1 (hypothetical protein E6C27_scaffold133G001330 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.14e-04
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 7   LKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIR 66
           LK+ AGKVL+G +E     ++ +P Q    VMK VE+L   +  K +  +K   + ER +
Sbjct: 75  LKHGAGKVLVGSEEARGNEDIQVPLQVLDKVMKFVEELLEEKRKKIDATKKKKVEVERRK 134

Query: 67  KKKEEER------ALCEERARKEEERIKEDEERRNRE 97
           K++E+E+      AL E+ AR+EE+R+KEDEER+NRE
Sbjct: 135 KRREKEKKERKGKALREQWARREEQRLKEDEERQNRE 171

[Close]

BLAST of CsGy5G018345.1 vs. ExPASy TrEMBL
Match: A0A0A0KP73 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 1.19e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
           MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME
Sbjct: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60

Query: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
           DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE
Sbjct: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110

[Close]

BLAST of CsGy5G018345.1 vs. ExPASy TrEMBL
Match: A0A0A0KDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.16e-13
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 45  QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104
           +V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 22  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 81

Query: 105 TMKKKKE 110
            MK+K+E
Sbjct: 82  MMKEKRE 88

[Close]

BLAST of CsGy5G018345.1 vs. ExPASy TrEMBL
Match: A0A5A7TXX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001330 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.54e-05
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 7   LKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIR 66
           LK+ AGKVL+G +E     ++ +P Q    VMK VE+L   +  K +  +K   + ER +
Sbjct: 75  LKHGAGKVLVGSEEARGNEDIQVPLQVLDKVMKFVEELLEEKRKKIDATKKKKVEVERRK 134

Query: 67  KKKEEER------ALCEERARKEEERIKEDEERRNRE 97
           K++E+E+      AL E+ AR+EE+R+KEDEER+NRE
Sbjct: 135 KRREKEKKERKGKALREQWARREEQRLKEDEERQNRE 171

The following BLAST results are available for this feature:

BLAST of CsGy5G018345.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G018345.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51420.1	2.46e-61	100.00	hypothetical protein Csa_008540 [Cucumis sativus]	[more]
KAE8646926.1	2.22e-13	74.63	hypothetical protein Csa_020807 [Cucumis sativus]	[more]
KAA0047864.1	1.14e-04	42.27	hypothetical protein E6C27_scaffold133G001330 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy5G018345.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP73	1.19e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1	[more]
A0A0A0KDX1	1.16e-13	74.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1	[more]
A0A5A7TXX4	5.54e-05	42.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsGy5G018345.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G018345	CsGy5G018345	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G018345.1.exon1	CsGy5G018345.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy5G018345.1	cds.CsGy5G018345.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G018345.1	CsGy5G018345.1-protein	polypeptide