CsGy5G018345 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G018345
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr5: 24607664 .. 24607996 (+)
RNA-Seq ExpressionCsGy5G018345
SyntenyCsGy5G018345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA

mRNA sequence

ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA

Coding sequence (CDS)

ATGACTCCATTACAAACACTTAAAAACAGGGCTGGAAAAGTACTTTTGGGGCATAAGGAACCAAGCACAGAGATAAATCTACACATTCCTTCTCAATTCTCAGGACTAGTTATGAAACTCGTAGAAAAATTACAAGTCGCTGAGAACACGAAGAGGGAAGTGGAAGAGAAGAATATGGAAGATGCAGAAAGAATTAGAAAGAAGAAAGAGGAAGAAAGAGCCCTCTGCGAGGAAAGAGCAAGAAAAGAAGAGGAAAGAATAAAAGAAGATGAAGAAAGAAGAAATAGAGAAGGCTTGCATAAAGCACAAACGATGAAGAAAAAGAAGGAATAA

Protein sequence

MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE*
Homology
BLAST of CsGy5G018345 vs. NCBI nr
Match: KGN51420.1 (hypothetical protein Csa_008540 [Cucumis sativus])

HSP 1 Score: 192 bits (489), Expect = 2.46e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
           MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME
Sbjct: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60

Query: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
           DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE
Sbjct: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110

BLAST of CsGy5G018345 vs. NCBI nr
Match: KAE8646926.1 (hypothetical protein Csa_020807 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.22e-13
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 45  QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104
           +V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 56  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 115

Query: 105 TMKKKKE 110
            MK+K+E
Sbjct: 116 MMKEKRE 122

BLAST of CsGy5G018345 vs. NCBI nr
Match: KAA0047864.1 (hypothetical protein E6C27_scaffold133G001330 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.14e-04
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 7   LKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIR 66
           LK+ AGKVL+G +E     ++ +P Q    VMK VE+L   +  K +  +K   + ER +
Sbjct: 75  LKHGAGKVLVGSEEARGNEDIQVPLQVLDKVMKFVEELLEEKRKKIDATKKKKVEVERRK 134

Query: 67  KKKEEER------ALCEERARKEEERIKEDEERRNRE 97
           K++E+E+      AL E+ AR+EE+R+KEDEER+NRE
Sbjct: 135 KRREKEKKERKGKALREQWARREEQRLKEDEERQNRE 171

BLAST of CsGy5G018345 vs. ExPASy TrEMBL
Match: A0A0A0KP73 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 1.19e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60
           MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME
Sbjct: 1   MTPLQTLKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNME 60

Query: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110
           DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE
Sbjct: 61  DAERIRKKKEEERALCEERARKEEERIKEDEERRNREGLHKAQTMKKKKE 110

BLAST of CsGy5G018345 vs. ExPASy TrEMBL
Match: A0A0A0KDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.16e-13
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 45  QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104
           +V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 22  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 81

Query: 105 TMKKKKE 110
            MK+K+E
Sbjct: 82  MMKEKRE 88

BLAST of CsGy5G018345 vs. ExPASy TrEMBL
Match: A0A5A7TXX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001330 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.54e-05
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 7   LKNRAGKVLLGHKEPSTEINLHIPSQFSGLVMKLVEKLQVAENTKREVEEKNMEDAERIR 66
           LK+ AGKVL+G +E     ++ +P Q    VMK VE+L   +  K +  +K   + ER +
Sbjct: 75  LKHGAGKVLVGSEEARGNEDIQVPLQVLDKVMKFVEELLEEKRKKIDATKKKKVEVERRK 134

Query: 67  KKKEEER------ALCEERARKEEERIKEDEERRNRE 97
           K++E+E+      AL E+ AR+EE+R+KEDEER+NRE
Sbjct: 135 KRREKEKKERKGKALREQWARREEQRLKEDEERQNRE 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN51420.12.46e-61100.00hypothetical protein Csa_008540 [Cucumis sativus][more]
KAE8646926.12.22e-1374.63hypothetical protein Csa_020807 [Cucumis sativus][more]
KAA0047864.11.14e-0442.27hypothetical protein E6C27_scaffold133G001330 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0KP731.19e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1[more]
A0A0A0KDX11.16e-1374.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1[more]
A0A5A7TXX45.54e-0542.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G018345.1CsGy5G018345.1mRNA