Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACTAAATTAGTCCAGAATACCAATAATGACCTCATATCATCCAATATCTATCTATCATCAAATATCTATCTATCAAATTATCTTCACTAAATGCGATGCAAATTAGAGAAAATGAAATCAAACCAAATTTCATCAACAACACTCTTAAACTCTATTCTATTTGTATCTTTCAACACTCTCACAATCCTTATGTTCCTTTCAGCAAGAAGCAAGGATTTGAGGAGTTTGGTTATATTCAATGCCCTTTCTTATCCCTCATTTGCCTTTGATGCCTTTGTTCTATCCATTACCTTTTCTTTCTCAACTGCTTTGGGTGCACTTTTGATTCCTAATAAGCCTATTCTAGCCATCTATTATGCCTTCTATTCCGTGGCTTTCATGGCTTTTGCTTTGTTTTTGCTGATTTTGGGACTCTATTACTTCATATGACTTCGTGTTATCTACATGTCAGTGTCATTTAAATATGAATTCTAAGTGTCTTAATGAGATGTTATCAAAGAAGAATGTGAAGCTAGCAATAATCCTTTTGCAAATCAAGTCTTGGATTATTGCTCACTTCTCTTGTACTTTACAGTCATCCCATTTTATCTCAATTTCATATTTATGTCTGTGTAATGTTTTTGGATTCCGATTTACACCTAAAAAGTTTGGTCATTATTCATCTCATAACTAACTATATATGTACATTTTGACAATTTAACATGTATGTTATTAAGTGTTTTAATCATGTGCTAATAGGAAAAGGGGAGTGAAATCTCATATCTCTTCCAGTTTACACAATGCTCATTGTTTCATAGAGACGTCCTCACTTTCCTTGTCAAGGAAATGAATGATATTTGGAAAATTGTATTCAATCTAAATACGCATCAACAACTTTCTTTCGCGAATTGATGATAATTAATCTTCTAACCCTTCTCTAATCGCTAGGCCTTCCAACGCTGCGAT
mRNA sequence
GAAACTAAATTAGTCCAGAATACCAATAATGACCTCATATCATCCAATATCTATCTATCATCAAATATCTATCTATCAAATTATCTTCACTAAATGCGATGCAAATTAGAGAAAATGAAATCAAACCAAATTTCATCAACAACACTCTTAAACTCTATTCTATTTGTATCTTTCAACACTCTCACAATCCTTATGTTCCTTTCAGCAAGAAGCAAGGATTTGAGGAGTTTGGTTATATTCAATGCCCTTTCTTATCCCTCATTTGCCTTTGATGCCTTTGTTCTATCCATTACCTTTTCTTTCTCAACTGCTTTGGGTGCACTTTTGATTCCTAATAAGCCTATTCTAGCCATCTATTATGCCTTCTATTCCGTGGCTTTCATGGCTTTTGCTTTGTTTTTGCTGATTTTGGGACTCTATTACTTCATATGACTTCGTGTTATCTACATGTCAGTGTCATTTAAATATGAATTCTAAGTGTCTTAATGAGATGTTATCAAAGAAGAATGTGAAGCTAGCAATAATCCTTTTGCAAATCAAGTCTTGGATTATTGCTCACTTCTCTTGTACTTTACAGTCATCCCATTTTATCTCAATTTCATATTTATGTCTGTGTAATGTTTTTGGATTCCGATTTACACCTAAAAAGTTTGGTCATTATTCATCTCATAACTAACTATATATGTACATTTTGACAATTTAACATGTATGTTATTAAGTGTTTTAATCATGTGCTAATAGGAAAAGGGGAGTGAAATCTCATATCTCTTCCAGTTTACACAATGCTCATTGTTTCATAGAGACGTCCTCACTTTCCTTGTCAAGGAAATGAATGATATTTGGAAAATTGTATTCAATCTAAATACGCATCAACAACTTTCTTTCGCGAATTGATGATAATTAATCTTCTAACCCTTCTCTAATCGCTAGGCCTTCCAACGCTGCGAT
Coding sequence (CDS)
ATGCGATGCAAATTAGAGAAAATGAAATCAAACCAAATTTCATCAACAACACTCTTAAACTCTATTCTATTTGTATCTTTCAACACTCTCACAATCCTTATGTTCCTTTCAGCAAGAAGCAAGGATTTGAGGAGTTTGGTTATATTCAATGCCCTTTCTTATCCCTCATTTGCCTTTGATGCCTTTGTTCTATCCATTACCTTTTCTTTCTCAACTGCTTTGGGTGCACTTTTGATTCCTAATAAGCCTATTCTAGCCATCTATTATGCCTTCTATTCCGTGGCTTTCATGGCTTTTGCTTTGTTTTTGCTGATTTTGGGACTCTATTACTTCATATGA
Protein sequence
MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI*
Homology
BLAST of CsGy5G012713 vs. NCBI nr
Match:
KGN49807.1 (hypothetical protein Csa_004664 [Cucumis sativus])
HSP 1 Score: 199 bits (505), Expect = 1.03e-63
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query: 1 MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60
MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD
Sbjct: 1 MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60
Query: 61 AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112
AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI
Sbjct: 61 AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112
BLAST of CsGy5G012713 vs. NCBI nr
Match:
KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 96.7 bits (239), Expect = 4.26e-23
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 0
Query: 6 EKMKSNQISS----TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDA 65
E MKS+Q + T LL IL++S NTL+IL+ LS RS+ +IF+ LS PS AFDA
Sbjct: 3 EMMKSDQNAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSNPSSAFDA 62
Query: 66 FVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110
FVLSITF+F ALGALLIP+KP LA +Y YSVA MA AL LLI GLYY
Sbjct: 63 FVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYY 111
BLAST of CsGy5G012713 vs. NCBI nr
Match:
KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])
HSP 1 Score: 72.0 bits (175), Expect = 2.45e-13
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0
Query: 1 MRCKLEKMK-----SNQISS----------TTLLNSILFVSFNTLTILMFLSARSKDLRS 60
M CKLEK K SNQI+ T +L SILF+S N+LTIL+ + +
Sbjct: 1 MVCKLEKRKEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGT-- 60
Query: 61 LVIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLI 110
VIF+ +PS A DAF++SI F+FS AL ALL+P + LA + A YS+A +A AL LLI
Sbjct: 61 -VIFHG--FPSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLI 120
BLAST of CsGy5G012713 vs. NCBI nr
Match:
KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 66.2 bits (160), Expect = 3.06e-11
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0
Query: 16 TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75
T +L SILF+S+N+LTIL+ + + VIF+ L PS DAFV+SI F+FS AL
Sbjct: 19 TVILQSILFLSWNSLTILVLFAGSAAGN---VIFHDL--PSSTIDAFVISIFFAFSGALS 78
Query: 76 ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110
ALL+P + LA + A YS+A MA AL LLI GLY+
Sbjct: 79 ALLVPQRHNLATFCALYSLASMASALLLLIWGLYH 108
BLAST of CsGy5G012713 vs. NCBI nr
Match:
KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])
HSP 1 Score: 50.4 bits (119), Expect = 1.79e-05
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0
Query: 47 VIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLIL 106
V+F+ LS S A DAFV+SI F+FS AL ALL+P + LA + A YS+ MA AL LLI
Sbjct: 10 VMFHGLS--SSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALLLLIW 69
Query: 107 GLYY 110
GLY+
Sbjct: 70 GLYH 71
BLAST of CsGy5G012713 vs. ExPASy TrEMBL
Match:
A0A0A0KN11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1)
HSP 1 Score: 199 bits (505), Expect = 5.00e-64
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query: 1 MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60
MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD
Sbjct: 1 MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60
Query: 61 AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112
AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI
Sbjct: 61 AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112
BLAST of CsGy5G012713 vs. ExPASy TrEMBL
Match:
A0A0A0KLQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 1.19e-13
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0
Query: 1 MRCKLEKMK-----SNQISS----------TTLLNSILFVSFNTLTILMFLSARSKDLRS 60
M CKLEK K SNQI+ T +L SILF+S N+LTIL+ + +
Sbjct: 1 MVCKLEKRKEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGT-- 60
Query: 61 LVIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLI 110
VIF+ +PS A DAF++SI F+FS AL ALL+P + LA + A YS+A +A AL LLI
Sbjct: 61 -VIFHG--FPSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLI 120
BLAST of CsGy5G012713 vs. ExPASy TrEMBL
Match:
A0A5A7U2V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00460 PE=4 SV=1)
HSP 1 Score: 50.4 bits (119), Expect = 8.69e-06
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0
Query: 47 VIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLIL 106
V+F+ LS S A DAFV+SI F+FS AL ALL+P + LA + A YS+ MA AL LLI
Sbjct: 10 VMFHGLS--SSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALLLLIW 69
Query: 107 GLYY 110
GLY+
Sbjct: 70 GLYH 71
BLAST of CsGy5G012713 vs. ExPASy TrEMBL
Match:
A0A061E956 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1)
HSP 1 Score: 48.1 bits (113), Expect = 1.91e-04
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 0
Query: 7 KMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSI 66
+M S+ TT+L SILF+SF TIL+ L + I +P+ F AF + I
Sbjct: 24 EMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA-TFHAFTICI 83
Query: 67 TFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLI 105
F+FS A AL+ PN P +A YS+A MA A+ LLI
Sbjct: 84 IFAFSGAFCALMTPNSPRIASLCGCYSIASMASAIGLLI 121
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN49807.1 | 1.03e-63 | 100.00 | hypothetical protein Csa_004664 [Cucumis sativus] | [more] |
| KAG6601931.1 | 4.26e-23 | 60.55 | hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN49809.1 | 2.45e-13 | 46.40 | hypothetical protein Csa_004648 [Cucumis sativus] | [more] |
| KAG6579131.1 | 3.06e-11 | 51.58 | hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0050243.1 | 1.79e-05 | 56.25 | hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KN11 | 5.00e-64 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1 | [more] |
| A0A0A0KLQ9 | 1.19e-13 | 46.40 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1 | [more] |
| A0A5A7U2V8 | 8.69e-06 | 56.25 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A061E956 | 1.91e-04 | 40.40 | Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
