CsGy5G012713.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G012713.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 14979097 .. 14980044 (+)
Sequence length	948
RNA-Seq Expression	CsGy5G012713.1
Synteny	CsGy5G012713.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACTAAATTAGTCCAGAATACCAATAATGACCTCATATCATCCAATATCTATCTATCATCAAATATCTATCTATCAAATTATCTTCACTAAATGCGATGCAAATTAGAGAAAATGAAATCAAACCAAATTTCATCAACAACACTCTTAAACTCTATTCTATTTGTATCTTTCAACACTCTCACAATCCTTATGTTCCTTTCAGCAAGAAGCAAGGATTTGAGGAGTTTGGTTATATTCAATGCCCTTTCTTATCCCTCATTTGCCTTTGATGCCTTTGTTCTATCCATTACCTTTTCTTTCTCAACTGCTTTGGGTGCACTTTTGATTCCTAATAAGCCTATTCTAGCCATCTATTATGCCTTCTATTCCGTGGCTTTCATGGCTTTTGCTTTGTTTTTGCTGATTTTGGGACTCTATTACTTCATATGACTTCGTGTTATCTACATGTCAGTGTCATTTAAATATGAATTCTAAGTGTCTTAATGAGATGTTATCAAAGAAGAATGTGAAGCTAGCAATAATCCTTTTGCAAATCAAGTCTTGGATTATTGCTCACTTCTCTTGTACTTTACAGTCATCCCATTTTATCTCAATTTCATATTTATGTCTGTGTAATGTTTTTGGATTCCGATTTACACCTAAAAAGTTTGGTCATTATTCATCTCATAACTAACTATATATGTACATTTTGACAATTTAACATGTATGTTATTAAGTGTTTTAATCATGTGCTAATAGGAAAAGGGGAGTGAAATCTCATATCTCTTCCAGTTTACACAATGCTCATTGTTTCATAGAGACGTCCTCACTTTCCTTGTCAAGGAAATGAATGATATTTGGAAAATTGTATTCAATCTAAATACGCATCAACAACTTTCTTTCGCGAATTGATGATAATTAATCTTCTAACCCTTCTCTAATCGCTAGGCCTTCCAACGCTGCGAT

mRNA sequence

GAAACTAAATTAGTCCAGAATACCAATAATGACCTCATATCATCCAATATCTATCTATCATCAAATATCTATCTATCAAATTATCTTCACTAAATGCGATGCAAATTAGAGAAAATGAAATCAAACCAAATTTCATCAACAACACTCTTAAACTCTATTCTATTTGTATCTTTCAACACTCTCACAATCCTTATGTTCCTTTCAGCAAGAAGCAAGGATTTGAGGAGTTTGGTTATATTCAATGCCCTTTCTTATCCCTCATTTGCCTTTGATGCCTTTGTTCTATCCATTACCTTTTCTTTCTCAACTGCTTTGGGTGCACTTTTGATTCCTAATAAGCCTATTCTAGCCATCTATTATGCCTTCTATTCCGTGGCTTTCATGGCTTTTGCTTTGTTTTTGCTGATTTTGGGACTCTATTACTTCATATGACTTCGTGTTATCTACATGTCAGTGTCATTTAAATATGAATTCTAAGTGTCTTAATGAGATGTTATCAAAGAAGAATGTGAAGCTAGCAATAATCCTTTTGCAAATCAAGTCTTGGATTATTGCTCACTTCTCTTGTACTTTACAGTCATCCCATTTTATCTCAATTTCATATTTATGTCTGTGTAATGTTTTTGGATTCCGATTTACACCTAAAAAGTTTGGTCATTATTCATCTCATAACTAACTATATATGTACATTTTGACAATTTAACATGTATGTTATTAAGTGTTTTAATCATGTGCTAATAGGAAAAGGGGAGTGAAATCTCATATCTCTTCCAGTTTACACAATGCTCATTGTTTCATAGAGACGTCCTCACTTTCCTTGTCAAGGAAATGAATGATATTTGGAAAATTGTATTCAATCTAAATACGCATCAACAACTTTCTTTCGCGAATTGATGATAATTAATCTTCTAACCCTTCTCTAATCGCTAGGCCTTCCAACGCTGCGAT

Coding sequence (CDS)

ATGCGATGCAAATTAGAGAAAATGAAATCAAACCAAATTTCATCAACAACACTCTTAAACTCTATTCTATTTGTATCTTTCAACACTCTCACAATCCTTATGTTCCTTTCAGCAAGAAGCAAGGATTTGAGGAGTTTGGTTATATTCAATGCCCTTTCTTATCCCTCATTTGCCTTTGATGCCTTTGTTCTATCCATTACCTTTTCTTTCTCAACTGCTTTGGGTGCACTTTTGATTCCTAATAAGCCTATTCTAGCCATCTATTATGCCTTCTATTCCGTGGCTTTCATGGCTTTTGCTTTGTTTTTGCTGATTTTGGGACTCTATTACTTCATATGA

Protein sequence

MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI*

Homology

[Close]

BLAST of CsGy5G012713.1 vs. NCBI nr
Match: KGN49807.1 (hypothetical protein Csa_004664 [Cucumis sativus])

HSP 1 Score: 199 bits (505), Expect = 1.03e-63
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60
           MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD
Sbjct: 1   MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60

Query: 61  AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112
           AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI
Sbjct: 61  AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112

[Close]

BLAST of CsGy5G012713.1 vs. NCBI nr
Match: KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 4.26e-23
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   EKMKSNQISS----TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDA 65
           E MKS+Q +     T LL  IL++S NTL+IL+ LS RS+     +IF+ LS PS AFDA
Sbjct: 3   EMMKSDQNAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSNPSSAFDA 62

Query: 66  FVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110
           FVLSITF+F  ALGALLIP+KP LA +Y  YSVA MA AL LLI GLYY
Sbjct: 63  FVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYY 111

[Close]

BLAST of CsGy5G012713.1 vs. NCBI nr
Match: KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.45e-13
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MRCKLEKMK-----SNQISS----------TTLLNSILFVSFNTLTILMFLSARSKDLRS 60
           M CKLEK K     SNQI+           T +L SILF+S N+LTIL+  +  +     
Sbjct: 1   MVCKLEKRKEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGT-- 60

Query: 61  LVIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLI 110
            VIF+   +PS A DAF++SI F+FS AL ALL+P +  LA + A YS+A +A AL LLI
Sbjct: 61  -VIFHG--FPSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLI 120

[Close]

BLAST of CsGy5G012713.1 vs. NCBI nr
Match: KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 3.06e-11
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 16  TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75
           T +L SILF+S+N+LTIL+  +  +      VIF+ L  PS   DAFV+SI F+FS AL 
Sbjct: 19  TVILQSILFLSWNSLTILVLFAGSAAGN---VIFHDL--PSSTIDAFVISIFFAFSGALS 78

Query: 76  ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110
           ALL+P +  LA + A YS+A MA AL LLI GLY+
Sbjct: 79  ALLVPQRHNLATFCALYSLASMASALLLLIWGLYH 108

[Close]

BLAST of CsGy5G012713.1 vs. NCBI nr
Match: KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.79e-05
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 47  VIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLIL 106
           V+F+ LS  S A DAFV+SI F+FS AL ALL+P +  LA + A YS+  MA AL LLI 
Sbjct: 10  VMFHGLS--SSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALLLLIW 69

Query: 107 GLYY 110
           GLY+
Sbjct: 70  GLYH 71

[Close]

BLAST of CsGy5G012713.1 vs. ExPASy TrEMBL
Match: A0A0A0KN11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 5.00e-64
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60
           MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD
Sbjct: 1   MRCKLEKMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFD 60

Query: 61  AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112
           AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI
Sbjct: 61  AFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYYFI 112

[Close]

BLAST of CsGy5G012713.1 vs. ExPASy TrEMBL
Match: A0A0A0KLQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.19e-13
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MRCKLEKMK-----SNQISS----------TTLLNSILFVSFNTLTILMFLSARSKDLRS 60
           M CKLEK K     SNQI+           T +L SILF+S N+LTIL+  +  +     
Sbjct: 1   MVCKLEKRKEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGT-- 60

Query: 61  LVIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLI 110
            VIF+   +PS A DAF++SI F+FS AL ALL+P +  LA + A YS+A +A AL LLI
Sbjct: 61  -VIFHG--FPSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLI 120

[Close]

BLAST of CsGy5G012713.1 vs. ExPASy TrEMBL
Match: A0A5A7U2V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00460 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.69e-06
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 47  VIFNALSYPSFAFDAFVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLIL 106
           V+F+ LS  S A DAFV+SI F+FS AL ALL+P +  LA + A YS+  MA AL LLI 
Sbjct: 10  VMFHGLS--SSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALLLLIW 69

Query: 107 GLYY 110
           GLY+
Sbjct: 70  GLYH 71

[Close]

BLAST of CsGy5G012713.1 vs. ExPASy TrEMBL
Match: A0A061E956 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.91e-04
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 7   KMKSNQISSTTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSI 66
           +M S+    TT+L SILF+SF   TIL+ L         + I     +P+  F AF + I
Sbjct: 24  EMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA-TFHAFTICI 83

Query: 67  TFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLI 105
            F+FS A  AL+ PN P +A     YS+A MA A+ LLI
Sbjct: 84  IFAFSGAFCALMTPNSPRIASLCGCYSIASMASAIGLLI 121

The following BLAST results are available for this feature:

BLAST of CsGy5G012713.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G012713.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49807.1	1.03e-63	100.00	hypothetical protein Csa_004664 [Cucumis sativus]	[more]
KAG6601931.1	4.26e-23	60.55	hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49809.1	2.45e-13	46.40	hypothetical protein Csa_004648 [Cucumis sativus]	[more]
KAG6579131.1	3.06e-11	51.58	hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0050243.1	1.79e-05	56.25	hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816...	[more]

BLAST of CsGy5G012713.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN11	5.00e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1	[more]
A0A0A0KLQ9	1.19e-13	46.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1	[more]
A0A5A7U2V8	8.69e-06	56.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A061E956	1.91e-04	40.40	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1	[more]

BLAST of CsGy5G012713.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G012713	CsGy5G012713	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G012713.1.utr5p1	CsGy5G012713.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G012713.1.exon1	CsGy5G012713.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy5G012713.1	cds.CsGy5G012713.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G012713.1.utr3p1	CsGy5G012713.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G012713.1	CsGy5G012713.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane