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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACGTACTCAAGGGCCCAAAAAAAAAAAAAACTAAAGCAGGATCATCTAAACAAATAGAAGGAAGAAAAGAATAAAGATGGGAACACAAGATCTTGAGAAGATTATCATATGCTATGGTAGAAGAGGAAAATGTCCCATTCATTGAGGACATTAATGAGTTATACGACTTATCGAATGACTCAGATGCGTATCATGGCCAGCGAATTATAGAGAACCCAATGTGAAGTGATGTAAAAAAGGTGATCCAATTGATTTCATGGCCAAGATTTGAATGGACAAATTACCCCATCCTTCACCAACCTTTAATCACACAACATCCCAATGCCCTGAACACGTTCCTTCATAAAAAACTTCGTTGTCGCCTAATCAAGTGAATAAAGAACCAAGCATAAGTAATTTAGCGCTTGACCTTAATGAGCTACCTGATCCTCAGACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA mRNA sequence ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA Coding sequence (CDS) ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA Protein sequence MSPVEPARRVEDPSLVHTQKYPRQPGEQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTDEEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGSTF*
Homology
BLAST of CsGy4G011407 vs. NCBI nr
Match: KAE8649406.1 (hypothetical protein Csa_023565, partial [Cucumis sativus]) HSP 1 Score: 239 bits (609), Expect = 7.92e-79 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 27 EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD 86
EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD
Sbjct: 1 EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD 60
Query: 87 EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST 146
EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST
Sbjct: 61 EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAE8649406.1 | 7.92e-79 | 100.00 | hypothetical protein Csa_023565, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 97..117 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 45..85 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..27 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 45..70 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 105..123 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 71..85 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 105..129 |
Relationships
The following mRNA feature(s) are a part of this gene:
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