CsGy4G011407.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G011407.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 11005018 .. 11005892 (-)
Sequence length	444
RNA-Seq Expression	CsGy4G011407.1
Synteny	CsGy4G011407.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACGTACTCAAGGGCCCAAAAAAAAAAAAAACTAAAGCAGGATCATCTAAACAAATAGAAGGAAGAAAAGAATAAAGATGGGAACACAAGATCTTGAGAAGATTATCATATGCTATGGTAGAAGAGGAAAATGTCCCATTCATTGAGGACATTAATGAGTTATACGACTTATCGAATGACTCAGATGCGTATCATGGCCAGCGAATTATAGAGAACCCAATGTGAAGTGATGTAAAAAAGGTGATCCAATTGATTTCATGGCCAAGATTTGAATGGACAAATTACCCCATCCTTCACCAACCTTTAATCACACAACATCCCAATGCCCTGAACACGTTCCTTCATAAAAAACTTCGTTGTCGCCTAATCAAGTGAATAAAGAACCAAGCATAAGTAATTTAGCGCTTGACCTTAATGAGCTACCTGATCCTCAGACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA

mRNA sequence

ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA

Coding sequence (CDS)

ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA

Protein sequence

MSPVEPARRVEDPSLVHTQKYPRQPGEQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTDEEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGSTF*

Homology

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BLAST of CsGy4G011407.1 vs. NCBI nr
Match: KAE8649406.1 (hypothetical protein Csa_023565, partial [Cucumis sativus])

HSP 1 Score: 239 bits (609), Expect = 7.92e-79
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 27  EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD 86
           EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD
Sbjct: 1   EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD 60

Query: 87  EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST 146
           EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST
Sbjct: 61  EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST 120

The following BLAST results are available for this feature:

BLAST of CsGy4G011407.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G011407.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649406.1	7.92e-79	100.00	hypothetical protein Csa_023565, partial [Cucumis sativus]	[more]

BLAST of CsGy4G011407.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy4G011407.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..129

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G011407	CsGy4G011407	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G011407.1.exon2	CsGy4G011407.1.exon2	exon
CsGy4G011407.1.exon1	CsGy4G011407.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G011407.1	cds.CsGy4G011407.1_2	CDS
cds.CsGy4G011407.1	cds.CsGy4G011407.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G011407.1	CsGy4G011407.1-protein	polypeptide