CsGy4G011407 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G011407
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 11005018 .. 11005892 (-)
RNA-Seq ExpressionCsGy4G011407
SyntenyCsGy4G011407
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACGTACTCAAGGGCCCAAAAAAAAAAAAAACTAAAGCAGGATCATCTAAACAAATAGAAGGAAGAAAAGAATAAAGATGGGAACACAAGATCTTGAGAAGATTATCATATGCTATGGTAGAAGAGGAAAATGTCCCATTCATTGAGGACATTAATGAGTTATACGACTTATCGAATGACTCAGATGCGTATCATGGCCAGCGAATTATAGAGAACCCAATGTGAAGTGATGTAAAAAAGGTGATCCAATTGATTTCATGGCCAAGATTTGAATGGACAAATTACCCCATCCTTCACCAACCTTTAATCACACAACATCCCAATGCCCTGAACACGTTCCTTCATAAAAAACTTCGTTGTCGCCTAATCAAGTGAATAAAGAACCAAGCATAAGTAATTTAGCGCTTGACCTTAATGAGCTACCTGATCCTCAGACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA

mRNA sequence

ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA

Coding sequence (CDS)

ATGAGTCCTGTAGAACCAGCCAGGCGAGTTGAGGATCCAAGTTTGGTACACACACAAAAATACCCTAGACAACCGGGTGAGCAAGCATGTGAAGTCGTTCCGATAGTTGTATCTGATCTACCTCTCTCCACCAGAACGCCAATGTCTCAAAATATAGTGCCAGATGACAATAGAAGCACAAACCCTACAATAGAGGAAGGTGGTAGAAACACAACAGTATCGGGAGAAGAAAGACATTGTGAACCCGCCAAGACTGATGAGGAGATTAGCGCGACAGAAATTCTGCGAATGAGAGACATGCTTCATGAAATATCGAAAGAAAATGAGAAAATAAAAAGAGCAAATGACCAACCTAAACAATCAGCTAGGAGAAATGGTCACAAAGGTAAATCAGTTATCATATGTAATGTCACATATTCACCACTTACTGGTAGCACATTCTAA

Protein sequence

MSPVEPARRVEDPSLVHTQKYPRQPGEQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTDEEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGSTF*
Homology
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BLAST of CsGy4G011407 vs. NCBI nr
Match: KAE8649406.1 (hypothetical protein Csa_023565, partial [Cucumis sativus])

HSP 1 Score: 239 bits (609), Expect = 7.92e-79
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 27  EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD 86
           EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD
Sbjct: 1   EQACEVVPIVVSDLPLSTRTPMSQNIVPDDNRSTNPTIEEGGRNTTVSGEERHCEPAKTD 60

Query: 87  EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST 146
           EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST
Sbjct: 61  EEISATEILRMRDMLHEISKENEKIKRANDQPKQSARRNGHKGKSVIICNVTYSPLTGST 120

The following BLAST results are available for this feature:
BLAST of CsGy4G011407 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G011407 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649406.17.92e-79100.00hypothetical protein Csa_023565, partial [Cucumis sativus][more]
BLAST of CsGy4G011407 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsGy4G011407 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G011407.1CsGy4G011407.1mRNA