Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA
mRNA sequence
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA
Coding sequence (CDS)
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA
Protein sequence
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSLLE*
Homology
BLAST of CsGy4G008600 vs. NCBI nr
Match:
KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])
HSP 1 Score: 287 bits (734), Expect = 1.13e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
Query: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
Query: 121 DFDNDPYYNFDISDPYFDSLLE 142
DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142
BLAST of CsGy4G008600 vs. NCBI nr
Match:
KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 197 bits (500), Expect = 3.54e-61
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
MYRFSLYFQV WIF W HQLS+RAKFKI KIL VKWWD ++E++I KWFKTN
Sbjct: 57 MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116
Query: 61 LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176
Query: 121 NDIDFDNDPYYNFDISDPYFDS 139
N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198
BLAST of CsGy4G008600 vs. NCBI nr
Match:
KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 194 bits (492), Expect = 5.81e-60
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD +NEE+IAKWFKTN L
Sbjct: 58 YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117
Query: 62 SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++ DD+K++D ED S+S N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177
Query: 122 DIDFDNDPYYNFDISDPYFDS 139
DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198
BLAST of CsGy4G008600 vs. NCBI nr
Match:
KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 162 bits (411), Expect = 8.93e-48
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0
Query: 17 SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
SHQLS+RAKFKIL KIL V+WWD +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65 SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124
Query: 77 MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
MT I GAKSEADLQ VM+TV++ DD K++ ED SNS NDIDF+N+PYYNFDI
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184
Query: 137 DPYFDSLLE 142
DPY +S E
Sbjct: 185 DPYLNSQPE 193
BLAST of CsGy4G008600 vs. NCBI nr
Match:
TYK04653.1 (cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa])
HSP 1 Score: 127 bits (320), Expect = 7.29e-34
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 0
Query: 38 WDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTI 97
+D +NEE+IAKWFKTN HLS+EE DQFLL KNSIMT IA AKSEADLQ VMETV++
Sbjct: 105 YDYSRLNEEQIAKWFKTNAHLSREE-DQFLLAKNSIMTSIAEAKSEADLQAVMETVVNNN 164
Query: 98 YDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS 139
DD+K++ ED S+S NDIDF NDPYYNFDI DPY DS
Sbjct: 165 SDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIFDPYLDS 205
BLAST of CsGy4G008600 vs. ExPASy TrEMBL
Match:
A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)
HSP 1 Score: 287 bits (734), Expect = 5.47e-98
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
Query: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
Query: 121 DFDNDPYYNFDISDPYFDSLLE 142
DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142
BLAST of CsGy4G008600 vs. ExPASy TrEMBL
Match:
A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)
HSP 1 Score: 197 bits (500), Expect = 1.71e-61
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
MYRFSLYFQV WIF W HQLS+RAKFKI KIL VKWWD ++E++I KWFKTN
Sbjct: 57 MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116
Query: 61 LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176
Query: 121 NDIDFDNDPYYNFDISDPYFDS 139
N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198
BLAST of CsGy4G008600 vs. ExPASy TrEMBL
Match:
A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)
HSP 1 Score: 194 bits (492), Expect = 2.81e-60
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD +NEE+IAKWFKTN L
Sbjct: 58 YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117
Query: 62 SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++ DD+K++D ED S+S N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177
Query: 122 DIDFDNDPYYNFDISDPYFDS 139
DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198
BLAST of CsGy4G008600 vs. ExPASy TrEMBL
Match:
A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)
HSP 1 Score: 162 bits (411), Expect = 4.32e-48
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0
Query: 17 SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
SHQLS+RAKFKIL KIL V+WWD +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65 SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124
Query: 77 MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
MT I GAKSEADLQ VM+TV++ DD K++ ED SNS NDIDF+N+PYYNFDI
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184
Query: 137 DPYFDSLLE 142
DPY +S E
Sbjct: 185 DPYLNSQPE 193
BLAST of CsGy4G008600 vs. ExPASy TrEMBL
Match:
A0A5D3BY11 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00050 PE=4 SV=1)
HSP 1 Score: 127 bits (320), Expect = 3.53e-34
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 0
Query: 38 WDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTI 97
+D +NEE+IAKWFKTN HLS+EE DQFLL KNSIMT IA AKSEADLQ VMETV++
Sbjct: 105 YDYSRLNEEQIAKWFKTNAHLSREE-DQFLLAKNSIMTSIAEAKSEADLQAVMETVVNNN 164
Query: 98 YDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS 139
DD+K++ ED S+S NDIDF NDPYYNFDI DPY DS
Sbjct: 165 SDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIFDPYLDS 205
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN53659.1 | 1.13e-97 | 100.00 | hypothetical protein Csa_014527 [Cucumis sativus] | [more] |
| KAA0051819.1 | 3.54e-61 | 71.13 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... | [more] |
| KAA0050626.1 | 5.81e-60 | 73.05 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp... | [more] |
| KAA0026133.1 | 8.93e-48 | 65.89 | hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593... | [more] |
| TYK04653.1 | 7.29e-34 | 67.65 | cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KXT5 | 5.47e-98 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1 | [more] |
| A0A5A7UEA0 | 1.71e-61 | 71.13 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5A7U8X4 | 2.81e-60 | 73.05 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
| A0A5D3CI63 | 4.32e-48 | 65.89 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BY11 | 3.53e-34 | 67.65 | Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=11... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
