CsGy4G008600.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G008600.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Retrotransposable element Tf2
Location	Gy14Chr4: 6616827 .. 6617255 (+)
Sequence length	429
RNA-Seq Expression	CsGy4G008600.2
Synteny	CsGy4G008600.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

mRNA sequence

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

Coding sequence (CDS)

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

Protein sequence

MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSLLE*

Homology

[Close]

BLAST of CsGy4G008600.2 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 287 bits (734), Expect = 1.13e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
           EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSLLE 142
           DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

[Close]

BLAST of CsGy4G008600.2 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (500), Expect = 3.54e-61
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
           MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
           L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S  
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

Query: 121 NDIDFDNDPYYNFDISDPYFDS 139
           N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198

[Close]

BLAST of CsGy4G008600.2 vs. NCBI nr
Match: KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (492), Expect = 5.81e-60
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD      +NEE+IAKWFKTN  L
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
           S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   DD+K++D ED    S+S  N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

Query: 122 DIDFDNDPYYNFDISDPYFDS 139
           DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198

[Close]

BLAST of CsGy4G008600.2 vs. NCBI nr
Match: KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 8.93e-48
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 17  SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
           SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
           MT I GAKSEADLQ VM+TV++   DD K++  ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 137 DPYFDSLLE 142
           DPY +S  E
Sbjct: 185 DPYLNSQPE 193

[Close]

BLAST of CsGy4G008600.2 vs. NCBI nr
Match: TYK04653.1 (cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 7.29e-34
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 38  WDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTI 97
           +D   +NEE+IAKWFKTN HLS+EE DQFLL KNSIMT IA AKSEADLQ VMETV++  
Sbjct: 105 YDYSRLNEEQIAKWFKTNAHLSREE-DQFLLAKNSIMTSIAEAKSEADLQAVMETVVNNN 164

Query: 98  YDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS 139
            DD+K++  ED    S+S  NDIDF NDPYYNFDI DPY DS
Sbjct: 165 SDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIFDPYLDS 205

[Close]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 5.47e-98
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
           EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSLLE 142
           DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

[Close]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 1.71e-61
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
           MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
           L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S  
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

Query: 121 NDIDFDNDPYYNFDISDPYFDS 139
           N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198

[Close]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 2.81e-60
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD      +NEE+IAKWFKTN  L
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
           S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   DD+K++D ED    S+S  N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

Query: 122 DIDFDNDPYYNFDISDPYFDS 139
           DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198

[Close]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL
Match: A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 4.32e-48
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 17  SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
           SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
           MT I GAKSEADLQ VM+TV++   DD K++  ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 137 DPYFDSLLE 142
           DPY +S  E
Sbjct: 185 DPYLNSQPE 193

[Close]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL
Match: A0A5D3BY11 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00050 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 3.53e-34
Identity = 69/102 (67.65%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 38  WDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTI 97
           +D   +NEE+IAKWFKTN HLS+EE DQFLL KNSIMT IA AKSEADLQ VMETV++  
Sbjct: 105 YDYSRLNEEQIAKWFKTNAHLSREE-DQFLLAKNSIMTSIAEAKSEADLQAVMETVVNNN 164

Query: 98  YDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDS 139
            DD+K++  ED    S+S  NDIDF NDPYYNFDI DPY DS
Sbjct: 165 SDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIFDPYLDS 205

The following BLAST results are available for this feature:

BLAST of CsGy4G008600.2 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G008600.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53659.1	1.13e-97	100.00	hypothetical protein Csa_014527 [Cucumis sativus]	[more]
KAA0051819.1	3.54e-61	71.13	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp...	[more]
KAA0050626.1	5.81e-60	73.05	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp...	[more]
KAA0026133.1	8.93e-48	65.89	hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593...	[more]
TYK04653.1	7.29e-34	67.65	cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa]	[more]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXT5	5.47e-98	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1	[more]
A0A5A7UEA0	1.71e-61	71.13	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X4	2.81e-60	73.05	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3CI63	4.32e-48	65.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BY11	3.53e-34	67.65	Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CsGy4G008600.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G008600	CsGy4G008600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G008600.2.exon1	CsGy4G008600.2.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G008600.2	cds.CsGy4G008600.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G008600.2	CsGy4G008600.2-protein	polypeptide