Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATAATCTCTTCTCTATAAATACCAGAAACCTAAGGGAAAAAAATTTAAGTTGGAAAAAAAGCTTGGAAGAGGAAAGCACATAAGGAAATGGAGAGCAAGAAGAAGAGTATCCACACTGTGGCGACCGTGGTGGTGGTGATGGTGGCCTTTATGATCGCTACTCTAGCTGACTCGGCCACCATAGCGACTGAGAATGTGGCTGCTGGAGTCTTGGTGGACGGCGGTAGCCATGCTTTCCCAAGAAAAAATGTTGTGAAAAATGGTGAAAATGGAGTATGTTTGGTAAAAGGTAAGGCTTGTAAATCTCACAAAGACTGCCCTTCCGACTGTGCTTGTTACACCGCTGGCCATTGTGGGGATTGGGTTCTCTAAAATTACTATGTTTGTTCTCTCTCTCAGGAGAAGGTTAATGATGATATAATTACATAACAAAGTTCGTATTTGATGGAAGACGG
mRNA sequence
AGAATAATCTCTTCTCTATAAATACCAGAAACCTAAGGGAAAAAAATTTAAGTTGGAAAAAAAGCTTGGAAGAGGAAAGCACATAAGGAAATGGAGAGCAAGAAGAAGAGTATCCACACTGTGGCGACCGTGGTGGTGGTGATGGTGGCCTTTATGATCGCTACTCTAGCTGACTCGGCCACCATAGCGACTGAGAATGTGGCTGCTGGAGTCTTGGTGGACGGCGGTAGCCATGCTTTCCCAAGAAAAAATGTTGTGAAAAATGGTGAAAATGGAGTATGTTTGGTAAAAGGTAAGGCTTGTAAATCTCACAAAGACTGCCCTTCCGACTGTGCTTGTTACACCGCTGGCCATTGTGGGGATTGGGTTCTCTAAAATTACTATGTTTGTTCTCTCTCTCAGGAGAAGGTTAATGATGATATAATTACATAACAAAGTTCGTATTTGATGGAAGACGG
Coding sequence (CDS)
ATGGAGAGCAAGAAGAAGAGTATCCACACTGTGGCGACCGTGGTGGTGGTGATGGTGGCCTTTATGATCGCTACTCTAGCTGACTCGGCCACCATAGCGACTGAGAATGTGGCTGCTGGAGTCTTGGTGGACGGCGGTAGCCATGCTTTCCCAAGAAAAAATGTTGTGAAAAATGGTGAAAATGGAGTATGTTTGGTAAAAGGTAAGGCTTGTAAATCTCACAAAGACTGCCCTTCCGACTGTGCTTGTTACACCGCTGGCCATTGTGGGGATTGGGTTCTCTAA
Protein sequence
MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGENGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL*
Homology
BLAST of CsGy4G000320 vs. NCBI nr
Match:
KGN52763.1 (hypothetical protein Csa_014543 [Cucumis sativus])
HSP 1 Score: 189 bits (481), Expect = 1.27e-60
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE
Sbjct: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
Query: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL
Sbjct: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
BLAST of CsGy4G000320 vs. NCBI nr
Match:
KAA0044338.1 (hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467.1 hypothetical protein E5676_scaffold655G00630 [Cucumis melo var. makuwa])
HSP 1 Score: 150 bits (380), Expect = 3.36e-45
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0
Query: 1 MESKKKSIH-TVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNG 60
MESKK S +VATVVV+MV FMIATLADS TI TENVA+G +V+GGSHAFPRKN++KNG
Sbjct: 1 MESKKNSTGLSVATVVVMMVVFMIATLADS-TITTENVASGAVVNGGSHAFPRKNIMKNG 60
Query: 61 E-NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
+ NGVCLVKGKACKSHKDCPS+CACYTAGHCGDWVL
Sbjct: 61 DQNGVCLVKGKACKSHKDCPSNCACYTAGHCGDWVL 95
BLAST of CsGy4G000320 vs. NCBI nr
Match:
KAG6576916.1 (hypothetical protein SDJN03_24490, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 58.9 bits (141), Expect = 4.84e-09
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0
Query: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
ME K K+ V ++V M+ M+ATLADSA + +GG F K ++K+
Sbjct: 1 MEMKMKNTGLVVVMMVTMI--MMATLADSA-----------VAEGGG--FRSKILLKSEG 60
Query: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWV 93
+ C +C++H+DCP +CACYTAGHCGD+V
Sbjct: 61 SSECPTY-LSCETHEDCPFNCACYTAGHCGDFV 77
BLAST of CsGy4G000320 vs. NCBI nr
Match:
KAA0044337.1 (hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466.1 hypothetical protein E5676_scaffold655G00620 [Cucumis melo var. makuwa])
HSP 1 Score: 58.5 bits (140), Expect = 1.01e-08
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 0
Query: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
M+S ++I AT++V+M+ +IAT+ +SA+ TE + V + +FPRK +++NG+
Sbjct: 1 MKSMNRNIGAAATMMVMML--LIATVVESAS-PTEKMIKLVTDHHAAGSFPRK-MMRNGK 60
Query: 61 -NGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
NGVC + G C C CACYTAGHCGD+V
Sbjct: 61 GNGVCPITGWPCNPAYGCGPFSDSCACYTAGHCGDFV 93
BLAST of CsGy4G000320 vs. NCBI nr
Match:
KAA0044336.1 (hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465.1 hypothetical protein E5676_scaffold655G00610 [Cucumis melo var. makuwa])
HSP 1 Score: 52.4 bits (124), Expect = 2.52e-06
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0
Query: 6 KSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDG-GSHAFPRKNVVKNGE-NGV 65
K++ AT++V+M+ +IAT+ +SA TE ++ D + +FPRK +++NG+ NGV
Sbjct: 3 KNMGAEATMMVMML--LIATVVESAASPTEKAMIELVTDHHAASSFPRK-MMRNGKGNGV 62
Query: 66 CLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
C ++G C C CACYT+G+CGD+V
Sbjct: 63 CPIRGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92
BLAST of CsGy4G000320 vs. ExPASy TrEMBL
Match:
A0A0A0KT53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1)
HSP 1 Score: 189 bits (481), Expect = 6.17e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE
Sbjct: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
Query: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL
Sbjct: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
BLAST of CsGy4G000320 vs. ExPASy TrEMBL
Match:
A0A5D3E009 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00630 PE=4 SV=1)
HSP 1 Score: 150 bits (380), Expect = 1.63e-45
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0
Query: 1 MESKKKSIH-TVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNG 60
MESKK S +VATVVV+MV FMIATLADS TI TENVA+G +V+GGSHAFPRKN++KNG
Sbjct: 1 MESKKNSTGLSVATVVVMMVVFMIATLADS-TITTENVASGAVVNGGSHAFPRKNIMKNG 60
Query: 61 E-NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
+ NGVCLVKGKACKSHKDCPS+CACYTAGHCGDWVL
Sbjct: 61 DQNGVCLVKGKACKSHKDCPSNCACYTAGHCGDWVL 95
BLAST of CsGy4G000320 vs. ExPASy TrEMBL
Match:
A0A5D3E0N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00620 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 4.88e-09
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 0
Query: 1 MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
M+S ++I AT++V+M+ +IAT+ +SA+ TE + V + +FPRK +++NG+
Sbjct: 1 MKSMNRNIGAAATMMVMML--LIATVVESAS-PTEKMIKLVTDHHAAGSFPRK-MMRNGK 60
Query: 61 -NGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
NGVC + G C C CACYTAGHCGD+V
Sbjct: 61 GNGVCPITGWPCNPAYGCGPFSDSCACYTAGHCGDFV 93
BLAST of CsGy4G000320 vs. ExPASy TrEMBL
Match:
A0A5D3E254 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00610 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 1.22e-06
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0
Query: 6 KSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDG-GSHAFPRKNVVKNGE-NGV 65
K++ AT++V+M+ +IAT+ +SA TE ++ D + +FPRK +++NG+ NGV
Sbjct: 3 KNMGAEATMMVMML--LIATVVESAASPTEKAMIELVTDHHAASSFPRK-MMRNGKGNGV 62
Query: 66 CLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
C ++G C C CACYT+G+CGD+V
Sbjct: 63 CPIRGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92
BLAST of CsGy4G000320 vs. ExPASy TrEMBL
Match:
A0A0A0KWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1)
HSP 1 Score: 52.4 bits (124), Expect = 1.37e-06
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 0
Query: 11 VATVVVVMVAFMIATLADSATIATENVAAGVLVDG--GSHAFPRKNVVKNGE-NGVCLVK 70
VAT++V+M+ +IAT+ +SA+ TE + LV + +FPRK +++NG+ NGVC +
Sbjct: 12 VATMMVMML--LIATVVESAS-PTEKITMIELVTNHHAASSFPRK-MMRNGKGNGVCPII 71
Query: 71 GKACK-SHKDC---PSDCACYTAGHCGDWV 93
G+ C + C CACYTAGHCGD+V
Sbjct: 72 GRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN52763.1 | 1.27e-60 | 100.00 | hypothetical protein Csa_014543 [Cucumis sativus] | [more] |
| KAA0044338.1 | 3.36e-45 | 81.25 | hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467... | [more] |
| KAG6576916.1 | 4.84e-09 | 40.86 | hypothetical protein SDJN03_24490, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0044337.1 | 1.01e-08 | 41.24 | hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466... | [more] |
| KAA0044336.1 | 2.52e-06 | 38.71 | hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KT53 | 6.17e-61 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1 | [more] |
| A0A5D3E009 | 1.63e-45 | 81.25 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3E0N0 | 4.88e-09 | 41.24 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3E254 | 1.22e-06 | 38.71 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0KWE4 | 1.37e-06 | 43.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
