CsGy4G000320.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G000320.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 204129 .. 204586 (+)
Sequence length	458
RNA-Seq Expression	CsGy4G000320.1
Synteny	CsGy4G000320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATAATCTCTTCTCTATAAATACCAGAAACCTAAGGGAAAAAAATTTAAGTTGGAAAAAAAGCTTGGAAGAGGAAAGCACATAAGGAAATGGAGAGCAAGAAGAAGAGTATCCACACTGTGGCGACCGTGGTGGTGGTGATGGTGGCCTTTATGATCGCTACTCTAGCTGACTCGGCCACCATAGCGACTGAGAATGTGGCTGCTGGAGTCTTGGTGGACGGCGGTAGCCATGCTTTCCCAAGAAAAAATGTTGTGAAAAATGGTGAAAATGGAGTATGTTTGGTAAAAGGTAAGGCTTGTAAATCTCACAAAGACTGCCCTTCCGACTGTGCTTGTTACACCGCTGGCCATTGTGGGGATTGGGTTCTCTAAAATTACTATGTTTGTTCTCTCTCTCAGGAGAAGGTTAATGATGATATAATTACATAACAAAGTTCGTATTTGATGGAAGACGG

mRNA sequence

AGAATAATCTCTTCTCTATAAATACCAGAAACCTAAGGGAAAAAAATTTAAGTTGGAAAAAAAGCTTGGAAGAGGAAAGCACATAAGGAAATGGAGAGCAAGAAGAAGAGTATCCACACTGTGGCGACCGTGGTGGTGGTGATGGTGGCCTTTATGATCGCTACTCTAGCTGACTCGGCCACCATAGCGACTGAGAATGTGGCTGCTGGAGTCTTGGTGGACGGCGGTAGCCATGCTTTCCCAAGAAAAAATGTTGTGAAAAATGGTGAAAATGGAGTATGTTTGGTAAAAGGTAAGGCTTGTAAATCTCACAAAGACTGCCCTTCCGACTGTGCTTGTTACACCGCTGGCCATTGTGGGGATTGGGTTCTCTAAAATTACTATGTTTGTTCTCTCTCTCAGGAGAAGGTTAATGATGATATAATTACATAACAAAGTTCGTATTTGATGGAAGACGG

Coding sequence (CDS)

ATGGAGAGCAAGAAGAAGAGTATCCACACTGTGGCGACCGTGGTGGTGGTGATGGTGGCCTTTATGATCGCTACTCTAGCTGACTCGGCCACCATAGCGACTGAGAATGTGGCTGCTGGAGTCTTGGTGGACGGCGGTAGCCATGCTTTCCCAAGAAAAAATGTTGTGAAAAATGGTGAAAATGGAGTATGTTTGGTAAAAGGTAAGGCTTGTAAATCTCACAAAGACTGCCCTTCCGACTGTGCTTGTTACACCGCTGGCCATTGTGGGGATTGGGTTCTCTAA

Protein sequence

MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGENGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL*

Homology

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BLAST of CsGy4G000320.1 vs. NCBI nr
Match: KGN52763.1 (hypothetical protein Csa_014543 [Cucumis sativus])

HSP 1 Score: 189 bits (481), Expect = 1.27e-60
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
          MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60

Query: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
          NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL
Sbjct: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94

[Close]

BLAST of CsGy4G000320.1 vs. NCBI nr
Match: KAA0044338.1 (hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467.1 hypothetical protein E5676_scaffold655G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 3.36e-45
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MESKKKSIH-TVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNG 60
          MESKK S   +VATVVV+MV FMIATLADS TI TENVA+G +V+GGSHAFPRKN++KNG
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADS-TITTENVASGAVVNGGSHAFPRKNIMKNG 60

Query: 61 E-NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
          + NGVCLVKGKACKSHKDCPS+CACYTAGHCGDWVL
Sbjct: 61 DQNGVCLVKGKACKSHKDCPSNCACYTAGHCGDWVL 95

[Close]

BLAST of CsGy4G000320.1 vs. NCBI nr
Match: KAG6576916.1 (hypothetical protein SDJN03_24490, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 4.84e-09
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
          ME K K+   V  ++V M+  M+ATLADSA           + +GG   F  K ++K+  
Sbjct: 1  MEMKMKNTGLVVVMMVTMI--MMATLADSA-----------VAEGGG--FRSKILLKSEG 60

Query: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWV 93
          +  C     +C++H+DCP +CACYTAGHCGD+V
Sbjct: 61 SSECPTY-LSCETHEDCPFNCACYTAGHCGDFV 77

[Close]

BLAST of CsGy4G000320.1 vs. NCBI nr
Match: KAA0044337.1 (hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466.1 hypothetical protein E5676_scaffold655G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.01e-08
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
          M+S  ++I   AT++V+M+  +IAT+ +SA+  TE +   V     + +FPRK +++NG+
Sbjct: 1  MKSMNRNIGAAATMMVMML--LIATVVESAS-PTEKMIKLVTDHHAAGSFPRK-MMRNGK 60

Query: 61 -NGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
           NGVC + G  C     C      CACYTAGHCGD+V
Sbjct: 61 GNGVCPITGWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

[Close]

BLAST of CsGy4G000320.1 vs. NCBI nr
Match: KAA0044336.1 (hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465.1 hypothetical protein E5676_scaffold655G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 2.52e-06
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 6  KSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDG-GSHAFPRKNVVKNGE-NGV 65
          K++   AT++V+M+  +IAT+ +SA   TE     ++ D   + +FPRK +++NG+ NGV
Sbjct: 3  KNMGAEATMMVMML--LIATVVESAASPTEKAMIELVTDHHAASSFPRK-MMRNGKGNGV 62

Query: 66 CLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
          C ++G  C     C      CACYT+G+CGD+V
Sbjct: 63 CPIRGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

[Close]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL
Match: A0A0A0KT53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 6.17e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
          MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60

Query: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
          NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL
Sbjct: 61 NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94

[Close]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL
Match: A0A5D3E009 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00630 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.63e-45
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MESKKKSIH-TVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNG 60
          MESKK S   +VATVVV+MV FMIATLADS TI TENVA+G +V+GGSHAFPRKN++KNG
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADS-TITTENVASGAVVNGGSHAFPRKNIMKNG 60

Query: 61 E-NGVCLVKGKACKSHKDCPSDCACYTAGHCGDWVL 94
          + NGVCLVKGKACKSHKDCPS+CACYTAGHCGDWVL
Sbjct: 61 DQNGVCLVKGKACKSHKDCPSNCACYTAGHCGDWVL 95

[Close]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL
Match: A0A5D3E0N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00620 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.88e-09
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDGGSHAFPRKNVVKNGE 60
          M+S  ++I   AT++V+M+  +IAT+ +SA+  TE +   V     + +FPRK +++NG+
Sbjct: 1  MKSMNRNIGAAATMMVMML--LIATVVESAS-PTEKMIKLVTDHHAAGSFPRK-MMRNGK 60

Query: 61 -NGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
           NGVC + G  C     C      CACYTAGHCGD+V
Sbjct: 61 GNGVCPITGWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

[Close]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL
Match: A0A5D3E254 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00610 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.22e-06
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 6  KSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVDG-GSHAFPRKNVVKNGE-NGV 65
          K++   AT++V+M+  +IAT+ +SA   TE     ++ D   + +FPRK +++NG+ NGV
Sbjct: 3  KNMGAEATMMVMML--LIATVVESAASPTEKAMIELVTDHHAASSFPRK-MMRNGKGNGV 62

Query: 66 CLVKGKACKSHKDC---PSDCACYTAGHCGDWV 93
          C ++G  C     C      CACYT+G+CGD+V
Sbjct: 63 CPIRGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

[Close]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL
Match: A0A0A0KWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.37e-06
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 11 VATVVVVMVAFMIATLADSATIATENVAAGVLVDG--GSHAFPRKNVVKNGE-NGVCLVK 70
          VAT++V+M+  +IAT+ +SA+  TE +    LV     + +FPRK +++NG+ NGVC + 
Sbjct: 12 VATMMVMML--LIATVVESAS-PTEKITMIELVTNHHAASSFPRK-MMRNGKGNGVCPII 71

Query: 71 GKACK-SHKDC---PSDCACYTAGHCGDWV 93
          G+ C   +  C      CACYTAGHCGD+V
Sbjct: 72 GRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

The following BLAST results are available for this feature:

BLAST of CsGy4G000320.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G000320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52763.1	1.27e-60	100.00	hypothetical protein Csa_014543 [Cucumis sativus]	[more]
KAA0044338.1	3.36e-45	81.25	hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467...	[more]
KAG6576916.1	4.84e-09	40.86	hypothetical protein SDJN03_24490, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044337.1	1.01e-08	41.24	hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466...	[more]
KAA0044336.1	2.52e-06	38.71	hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465...	[more]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT53	6.17e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1	[more]
A0A5D3E009	1.63e-45	81.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E0N0	4.88e-09	41.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E254	1.22e-06	38.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE4	1.37e-06	43.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1	[more]

BLAST of CsGy4G000320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G000320	CsGy4G000320	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G000320.1.utr5p1	CsGy4G000320.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G000320.1.exon1	CsGy4G000320.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G000320.1	cds.CsGy4G000320.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G000320.1.utr3p1	CsGy4G000320.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G000320.1	CsGy4G000320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane