Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCATTTTCCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAGTTAATTGATTAATTTTGTTTTTTGGGATTATTCTTTGATTCTTATTCAACAAATTTCTGGGATTTTCTTTGTATGTATGGAGTATGTATGGATGATTCAGTTACTCATTTTTGGAGTGAAATTTCGGAATCCTTCGTGGTTTTGTTTATTAACTGTTCATCAATTTTTTGAATGACCAAGCTGAAATTACTGCTCAAATTTTAATATATTCAAAATTCATCCACCACATGTGCACGCATCAGTTGGAGAAAGAAATTTTGGTCAACCAAATTTTGGCACATCAAGAGAGCAAAAAAAAAACTACCAATTTTAGTAATTTTAGGGCAATTAAGAATTAGTCCCTAAATTAAAATTAGAAGCCAAATAAATTGTGAAGTAAAACATGTTGCATTCGTCTATGTATTGAGAGGGTTAGCAAGAGAGTCGCTGGGATGGGGTCTTCCCCAATCCTCGTTGAGGAATAAATTTACCCCATCCCCTACCATTTGAAGGTTTGGACGAGGGCCGGAATTCCTCCTCCAAGAAATGGGTCAACATGTGTTCCTATTCCCTGTTTTTGATCTTTTTAAAAAATGACAAGCAGACATAGTACAACTACAAATAGCTTCTGGGCTTTACTCTTGCATTGACTATTAAATAATTTGGATAAAAAGGTTTGGGTAGTGGGACTGGGATCTACACTAACTGCGTGTATGTGTGTATGTAAATAAAAACAAAATCGAGAAAAGGTCAAGAGTCGAGGTGCTCAGGGTGAGGATATACCCTCCCCATTCCCGACTATGCTTCCAGAAAGAGTTCCCACGACCCCGATCATTGGACAAACCAAAAATTTCCTACCTCAATCGGAGTAG
mRNA sequence
ATGCCCACCATTTTCCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAAAAAGGTCAAGAGTCGAGGTGCTCAGGGTGAGGATATACCCTCCCCATTCCCGACTATGCTTCCAGAAAGAGTTCCCACGACCCCGATCATTGGACAAACCAAAAATTTCCTACCTCAATCGGAGTAG
Coding sequence (CDS)
ATGCCCACCATTTTCCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAAAAAGGTCAAGAGTCGAGGTGCTCAGGGTGAGGATATACCCTCCCCATTCCCGACTATGCTTCCAGAAAGAGTTCCCACGACCCCGATCATTGGACAAACCAAAAATTTCCTACCTCAATCGGAGTAG
Protein sequence
MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAEKKVKSRGAQGEDIPSPFPTMLPERVPTTPIIGQTKNFLPQSE*
Homology
BLAST of CsGy3G039545 vs. NCBI nr
Match:
KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])
HSP 1 Score: 265 bits (678), Expect = 3.36e-89
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE--KKVKSRGAQGEDIPSPFPTML 120
SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE +KVKSRGAQGEDIPSPFPTM
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAENGEKVKSRGAQGEDIPSPFPTMH 120
Query: 121 PERVPTTPIIGQTKNFLPQSE 139
PE VPTTPIIGQTKNFLPQSE
Sbjct: 121 PEIVPTTPIIGQTKNFLPQSE 141
BLAST of CsGy3G039545 vs. NCBI nr
Match:
XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])
HSP 1 Score: 194 bits (494), Expect = 9.35e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
BLAST of CsGy3G039545 vs. NCBI nr
Match:
KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])
HSP 1 Score: 184 bits (467), Expect = 1.22e-57
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1 MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAE 97
BLAST of CsGy3G039545 vs. NCBI nr
Match:
KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 141 bits (355), Expect = 1.43e-40
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVA---GREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRR 60
MPTIFQSQP P R PS+A GREP R+ +RSTCRSFSF GMVR GRN+M GD+ RR
Sbjct: 1 MPTIFQSQPQPDRRPSLAAAAGREPSRS--IRSTCRSFSFSGMVRSGRNVMTAGGDKFRR 60
Query: 61 NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
NQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE
Sbjct: 61 NQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAE 98
BLAST of CsGy3G039545 vs. NCBI nr
Match:
KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 121 bits (303), Expect = 1.08e-32
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60
MPTIFQSQ P PS AG RE GR+R++RS CRS SFGG+ RGGRN+ A GD+ RR
Sbjct: 1 MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60
Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
BLAST of CsGy3G039545 vs. ExPASy TrEMBL
Match:
A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)
HSP 1 Score: 194 bits (494), Expect = 4.53e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
BLAST of CsGy3G039545 vs. ExPASy TrEMBL
Match:
A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)
HSP 1 Score: 184 bits (467), Expect = 5.90e-58
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0
Query: 1 MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1 MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60
Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAE 97
BLAST of CsGy3G039545 vs. ExPASy TrEMBL
Match:
A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 1.59e-16
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 1 MPTIFQSQP------PPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLM 60
M TI Q Q P R++P R N+A RSTC + G VR ++
Sbjct: 1 METISQKQTIRRLPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGY 60
Query: 61 ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
+P DR RR+Q +RE+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61 LVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108
BLAST of CsGy3G039545 vs. ExPASy TrEMBL
Match:
B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 4.48e-16
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 0
Query: 1 MPTIFQSQP-----PPRRTPSVAGREPGRNRAV-------RSTCRSFSFGGMVRGGRNLM 60
M TI Q Q PP R G RN V RSTC + G VR ++
Sbjct: 1 METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60
Query: 61 ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
+P D+ RRNQ + E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61 LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108
BLAST of CsGy3G039545 vs. ExPASy TrEMBL
Match:
A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 1.79e-15
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0
Query: 8 QPPPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGS 67
QPP R++ R N+ RSTC + G VR ++ +P D+ RRNQ +
Sbjct: 14 QPPARQSLGEGNRVRRNNQEASISPRPRSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQAN 73
Query: 68 REVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 74 TEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108
BLAST of CsGy3G039545 vs. TAIR 10
Match:
AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 47/100 (47.00%), Postives = 51/100 (51.00%), Query Frame = 0
Query: 12 RRTPSVAGRE-PGRNRAVRSTCRSFSFGGMVRGGRNLMALPGD-RCRR------------ 71
RR PS G E PGR+ R RS G VR PG +C R
Sbjct: 5 RRIPSGEGVEMPGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLM 64
Query: 72 ---NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMS 95
+ GSREVLRRAL PP RR LRW+NFRPTPSRL MS
Sbjct: 65 RKASDGSREVLRRALTPPIRRMNLRWLNFRPTPSRLCKMS 104
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN60027.2 | 3.36e-89 | 96.45 | hypothetical protein Csa_001878 [Cucumis sativus] | [more] |
| XP_011652880.1 | 9.35e-62 | 100.00 | uncharacterized protein LOC105435142 [Cucumis sativus] | [more] |
| KAA0036871.1 | 1.22e-57 | 94.85 | uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9... | [more] |
| KAG7024857.1 | 1.43e-40 | 75.00 | hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6607862.1 | 1.08e-32 | 69.39 | hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LD23 | 4.53e-62 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1 | [more] |
| A0A5A7T5L7 | 5.90e-58 | 94.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6N2MHB8 | 1.59e-16 | 48.15 | Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=... | [more] |
| B9N1L2 | 4.48e-16 | 48.15 | Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ... | [more] |
| A0A4U5P590 | 1.79e-15 | 48.42 | Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G15518.1 | 1.5e-10 | 47.00 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
