CsGy3G039545.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G039545.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NAC domain protein
Location	Gy14Chr3: 37225037 .. 37226180 (-)
Sequence length	420
RNA-Seq Expression	CsGy3G039545.1
Synteny	CsGy3G039545.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACCATTTTCCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAGTTAATTGATTAATTTTGTTTTTTGGGATTATTCTTTGATTCTTATTCAACAAATTTCTGGGATTTTCTTTGTATGTATGGAGTATGTATGGATGATTCAGTTACTCATTTTTGGAGTGAAATTTCGGAATCCTTCGTGGTTTTGTTTATTAACTGTTCATCAATTTTTTGAATGACCAAGCTGAAATTACTGCTCAAATTTTAATATATTCAAAATTCATCCACCACATGTGCACGCATCAGTTGGAGAAAGAAATTTTGGTCAACCAAATTTTGGCACATCAAGAGAGCAAAAAAAAAACTACCAATTTTAGTAATTTTAGGGCAATTAAGAATTAGTCCCTAAATTAAAATTAGAAGCCAAATAAATTGTGAAGTAAAACATGTTGCATTCGTCTATGTATTGAGAGGGTTAGCAAGAGAGTCGCTGGGATGGGGTCTTCCCCAATCCTCGTTGAGGAATAAATTTACCCCATCCCCTACCATTTGAAGGTTTGGACGAGGGCCGGAATTCCTCCTCCAAGAAATGGGTCAACATGTGTTCCTATTCCCTGTTTTTGATCTTTTTAAAAAATGACAAGCAGACATAGTACAACTACAAATAGCTTCTGGGCTTTACTCTTGCATTGACTATTAAATAATTTGGATAAAAAGGTTTGGGTAGTGGGACTGGGATCTACACTAACTGCGTGTATGTGTGTATGTAAATAAAAACAAAATCGAGAAAAGGTCAAGAGTCGAGGTGCTCAGGGTGAGGATATACCCTCCCCATTCCCGACTATGCTTCCAGAAAGAGTTCCCACGACCCCGATCATTGGACAAACCAAAAATTTCCTACCTCAATCGGAGTAG

mRNA sequence

ATGCCCACCATTTTCCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAAAAAGGTCAAGAGTCGAGGTGCTCAGGGTGAGGATATACCCTCCCCATTCCCGACTATGCTTCCAGAAAGAGTTCCCACGACCCCGATCATTGGACAAACCAAAAATTTCCTACCTCAATCGGAGTAG

Coding sequence (CDS)

ATGCCCACCATTTTCCAGTCCCAACCCCCGCCTCGCCGGACCCCCTCCGTTGCTGGAAGAGAACCTGGCCGGAACCGTGCCGTTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTAAGAGGTGGCCGCAATCTGATGGCGCTGCCCGGAGATAGGTGCCGCCGGAATCAGGGAAGCAGAGAGGTTCTAAGAAGGGCTTTGATGCCGCCGAGCCGGAGACCCACACTCCGATGGATGAATTTCCGGCCAACTCCCAGTCGTCTTTCCATAATGTCTATGGCCGAAAAAAAGGTCAAGAGTCGAGGTGCTCAGGGTGAGGATATACCCTCCCCATTCCCGACTATGCTTCCAGAAAGAGTTCCCACGACCCCGATCATTGGACAAACCAAAAATTTCCTACCTCAATCGGAGTAG

Protein sequence

MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAEKKVKSRGAQGEDIPSPFPTMLPERVPTTPIIGQTKNFLPQSE*

Homology

[Close]

BLAST of CsGy3G039545.1 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 265 bits (678), Expect = 3.36e-89
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
           MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1   MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61  SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE--KKVKSRGAQGEDIPSPFPTML 120
           SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE  +KVKSRGAQGEDIPSPFPTM 
Sbjct: 61  SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAENGEKVKSRGAQGEDIPSPFPTMH 120

Query: 121 PERVPTTPIIGQTKNFLPQSE 139
           PE VPTTPIIGQTKNFLPQSE
Sbjct: 121 PEIVPTTPIIGQTKNFLPQSE 141

[Close]

BLAST of CsGy3G039545.1 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 9.35e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97

[Close]

BLAST of CsGy3G039545.1 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 1.22e-57
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAE 97

[Close]

BLAST of CsGy3G039545.1 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (355), Expect = 1.43e-40
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVA---GREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRR 60
          MPTIFQSQP P R PS+A   GREP R+  +RSTCRSFSF GMVR GRN+M   GD+ RR
Sbjct: 1  MPTIFQSQPQPDRRPSLAAAAGREPSRS--IRSTCRSFSFSGMVRSGRNVMTAGGDKFRR 60

Query: 61 NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
          NQG REVLRRALMPP+R+PTLRW+NFRPTPSRLS MSMAE
Sbjct: 61 NQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAE 98

[Close]

BLAST of CsGy3G039545.1 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (303), Expect = 1.08e-32
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60

Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]

BLAST of CsGy3G039545.1 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 4.53e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97

[Close]

BLAST of CsGy3G039545.1 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 5.90e-58
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60
          MPTIFQSQPPPRR+PSVAGRE GR RAVRSTCRS SFGGMVRGGRNLMALPGDRCRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAE 97
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS+MSMAE
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAE 97

[Close]

BLAST of CsGy3G039545.1 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.59e-16
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MPTIFQSQP------PPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q       P R++P    R    N+A       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTIRRLPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
            +P DR RR+Q +RE+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CsGy3G039545.1 vs. ExPASy TrEMBL
Match: B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.48e-16
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 1   MPTIFQSQP-----PPRRTPSVAGREPGRNRAV-------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q      PP R     G    RN  V       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTRGRLQPPARQSLGEGNRVRRNNQVASISPRPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  ALPGDRCRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
            +P D+ RRNQ + E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 61  LVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CsGy3G039545.1 vs. ExPASy TrEMBL
Match: A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.79e-15
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 8   QPPPRRTPSVAGREPGRNRAV------RSTCRSFSFGGMVRGGRNLMALPGDRCRRNQGS 67
           QPP R++     R    N+        RSTC   +  G VR  ++   +P D+ RRNQ +
Sbjct: 14  QPPARQSLGEGNRVRRNNQEASISPRPRSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQAN 73

Query: 68  REVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96
            E+LRRAL PP+RR TLRW NF+PTPSRLS MSMA
Sbjct: 74  TEILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of CsGy3G039545.1 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 47/100 (47.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 12  RRTPSVAGRE-PGRNRAVRSTCRSFSFGGMVRGGRNLMALPGD-RCRR------------ 71
           RR PS  G E PGR+   R   RS   G  VR        PG  +C R            
Sbjct: 5   RRIPSGEGVEMPGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLM 64

Query: 72  ---NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMS 95
              + GSREVLRRAL PP RR  LRW+NFRPTPSRL  MS
Sbjct: 65  RKASDGSREVLRRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:

BLAST of CsGy3G039545.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G039545.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60027.2	3.36e-89	96.45	hypothetical protein Csa_001878 [Cucumis sativus]	[more]
XP_011652880.1	9.35e-62	100.00	uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
KAA0036871.1	1.22e-57	94.85	uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAG7024857.1	1.43e-40	75.00	hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607862.1	1.08e-32	69.39	hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy3G039545.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD23	4.53e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
A0A5A7T5L7	5.90e-58	94.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6N2MHB8	1.59e-16	48.15	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=...	[more]
B9N1L2	4.48e-16	48.15	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ...	[more]
A0A4U5P590	1.79e-15	48.42	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1	[more]

BLAST of CsGy3G039545.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15518.1	1.5e-10	47.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G039545	CsGy3G039545	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G039545.1.exon2	CsGy3G039545.1.exon2	exon
CsGy3G039545.1.exon1	CsGy3G039545.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G039545.1	cds.CsGy3G039545.1_2	CDS
cds.CsGy3G039545.1	cds.CsGy3G039545.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G039545.1	CsGy3G039545.1-protein	polypeptide