Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTATTATCATAAGTTCTTTTGCCTTGTGCTCATATTGTTCTTGTGTTCTTCCTCCATTTCCGAAAGTCGCTTGCTTTCTTCTTCTTCTTCTTTCTCTTCTTCGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCATCGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA
mRNA sequence
ATGGCTTATTATCATAAGTTCTTTTGCCTTGTGCTCATATTGTTCTTGTGTTCTTCCTCCATTTCCGAAAGTCGCTTGCTTTCTTCTTCTTCTTCTTTCTCTTCTTCGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCATCGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA
Coding sequence (CDS)
ATGGCTTATTATCATAAGTTCTTTTGCCTTGTGCTCATATTGTTCTTGTGTTCTTCCTCCATTTCCGAAAGTCGCTTGCTTTCTTCTTCTTCTTCTTTCTCTTCTTCGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCATCGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA
Protein sequence
MAYYHKFFCLVLILFLCSSSISESRLLSSSSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH
Homology
BLAST of Cp4.1LG06g06660 vs. ExPASy Swiss-Prot
Match:
Q3EDH8 (CLAVATA3/ESR (CLE)-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=CLE3 PE=2 SV=1)
HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0
Query: 1 MAYYHKFFCLVLILFLCSSSISESRLLSSSSSFSSSANTK---NEIFVKNVKELLKVIIE 60
MA + CLVL+L L +S+ E R L + FS S+ K E+F + +KE+
Sbjct: 1 MASLKLWVCLVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELF-ERLKEMKGRSEG 60
Query: 61 EKEKLGRHFVSKRLSPGGPDPRHH 82
E+ LG SKRLSPGGPDPRHH
Sbjct: 61 EETILGNTLDSKRLSPGGPDPRHH 83
BLAST of Cp4.1LG06g06660 vs. NCBI nr
Match:
KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])
HSP 1 Score: 101 bits (252), Expect = 4.90e-26
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 0
Query: 7 FFCLVLILFLCSSSISESRLLSS---SSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLG 66
F+ LVLIL LCSS ISESRLLSS S S SSS+N KNE+FVKN +E+LK IIEEKEKLG
Sbjct: 11 FWGLVLILLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLG 70
Query: 67 RHFVSKRLSPGGPDPRHH 81
RHFVSKRLSPGGPDPRHH
Sbjct: 71 RHFVSKRLSPGGPDPRHH 87
BLAST of Cp4.1LG06g06660 vs. NCBI nr
Match:
KAF7836665.1 (CLAVATA3/ESR (CLE)-related protein 1-like [Senna tora])
HSP 1 Score: 54.7 bits (130), Expect = 1.86e-07
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0
Query: 10 LVLILFLCSSSISESRLLSSSSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSK 69
L L+L S SIS++R L SS S +S+ N + +F +N K++LK II + LG
Sbjct: 20 LSLLLLSTSISISQARPLPSSFSNNSNGNQSHHVFKENAKQVLKEIIRRHQLLGEQNYPT 79
Query: 70 RLSPGGPDPRHH 81
RLSPGGPDP HH
Sbjct: 80 RLSPGGPDPHHH 91
BLAST of Cp4.1LG06g06660 vs. NCBI nr
Match:
XP_031267366.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])
HSP 1 Score: 53.5 bits (127), Expect = 7.04e-07
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0
Query: 37 ANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
+N + + ++N KE+LK ++ +E LG+ F SKRLSPGGPDPRHH
Sbjct: 60 SNDEGRVLMENAKEMLKDGVKRQEILGKFFDSKRLSPGGPDPRHH 104
BLAST of Cp4.1LG06g06660 vs. NCBI nr
Match:
XP_031265123.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])
HSP 1 Score: 51.6 bits (122), Expect = 3.97e-06
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0
Query: 33 FSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
F +N + + ++N KE+LK ++ +E LG+ F SKR+SPGGPDP HH
Sbjct: 56 FQQYSNDEGRVLMENAKEMLKDSVKRQEILGKFFDSKRVSPGGPDPHHH 104
BLAST of Cp4.1LG06g06660 vs. NCBI nr
Match:
KAE9617029.1 (hypothetical protein Lalb_Chr03g0031051 [Lupinus albus] >KAF1897280.1 hypothetical protein Lal_00034983 [Lupinus albus])
HSP 1 Score: 48.9 bits (115), Expect = 2.37e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0
Query: 37 ANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
+N +N F ++VK++LK I K+ G ++ RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75
BLAST of Cp4.1LG06g06660 vs. ExPASy TrEMBL
Match:
A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)
HSP 1 Score: 101 bits (252), Expect = 2.37e-26
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 0
Query: 7 FFCLVLILFLCSSSISESRLLSS---SSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLG 66
F+ LVLIL LCSS ISESRLLSS S S SSS+N KNE+FVKN +E+LK IIEEKEKLG
Sbjct: 11 FWGLVLILLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLG 70
Query: 67 RHFVSKRLSPGGPDPRHH 81
RHFVSKRLSPGGPDPRHH
Sbjct: 71 RHFVSKRLSPGGPDPRHH 87
BLAST of Cp4.1LG06g06660 vs. ExPASy TrEMBL
Match:
A0A6A5PKV4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1)
HSP 1 Score: 48.9 bits (115), Expect = 1.15e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0
Query: 37 ANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
+N +N F ++VK++LK I K+ G ++ RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75
BLAST of Cp4.1LG06g06660 vs. ExPASy TrEMBL
Match:
A0A444Y3W2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 1.90e-05
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0
Query: 41 NEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
+ +FV+N K++LK II K+ LG + RLSPGGP+P HH
Sbjct: 41 HRVFVENAKQMLKEIIRRKQLLGTQYKINRLSPGGPNPHHH 81
BLAST of Cp4.1LG06g06660 vs. ExPASy TrEMBL
Match:
A0A6A4MZR2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1)
HSP 1 Score: 47.8 bits (112), Expect = 3.49e-05
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0
Query: 35 SSANTKNEIFVKNVKELLKVIIEEKEKLG-RHFVSKRLSPGGPDPRHH 81
S+ N + IF+++ K++LK II K+ LG H+ + RLSPGGPDP HH
Sbjct: 31 SNNNENHAIFMESSKQVLKEIIRRKQLLGITHYETNRLSPGGPDPHHH 78
BLAST of Cp4.1LG06g06660 vs. ExPASy TrEMBL
Match:
A0A2P5DTM2 (CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 PE=4 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 4.62e-05
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 0
Query: 8 FCLVLILFLCSSSISESRLLSSSSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFV 67
F L LIL L S E+R S SFS K++I ++N K +LK I + GR FV
Sbjct: 6 FLLCLILVLISFPNYETRPSPSPGSFSD--KPKHQILMENAKRVLKDSIARQN--GRRFV 65
Query: 68 SKRLSPGGPDPRHH 81
RLSPGGPDPRHH
Sbjct: 66 PNRLSPGGPDPRHH 75
BLAST of Cp4.1LG06g06660 vs. TAIR 10
Match:
AT1G06225.1 (CLAVATA3/ESR-RELATED 3 )
HSP 1 Score: 47.0 bits (110), Expect = 8.5e-06
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0
Query: 1 MAYYHKFFCLVLILFLCSSSISESRLLSSSSSFSSSANTK---NEIFVKNVKELLKVIIE 60
MA + CLVL+L L +S+ E R L + FS S+ K E+F + +KE+
Sbjct: 1 MASLKLWVCLVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELF-ERLKEMKGRSEG 60
Query: 61 EKEKLGRHFVSKRLSPGGPDPRHH 82
E+ LG SKRLSPGGPDPRHH
Sbjct: 61 EETILGNTLDSKRLSPGGPDPRHH 83
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q3EDH8 | 1.2e-04 | 44.05 | CLAVATA3/ESR (CLE)-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=CLE3 PE=... | [more] |
Match Name | E-value | Identity | Description | |
KGN55081.1 | 4.90e-26 | 79.49 | hypothetical protein Csa_012463 [Cucumis sativus] | [more] |
KAF7836665.1 | 1.86e-07 | 47.22 | CLAVATA3/ESR (CLE)-related protein 1-like [Senna tora] | [more] |
XP_031267366.1 | 7.04e-07 | 53.33 | CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera] | [more] |
XP_031265123.1 | 3.97e-06 | 46.94 | CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera] | [more] |
KAE9617029.1 | 2.37e-05 | 48.89 | hypothetical protein Lalb_Chr03g0031051 [Lupinus albus] >KAF1897280.1 hypothetic... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L4M1 | 2.37e-26 | 79.49 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1 | [more] |
A0A6A5PKV4 | 1.15e-05 | 48.89 | Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1 | [more] |
A0A444Y3W2 | 1.90e-05 | 51.22 | Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1 | [more] |
A0A6A4MZR2 | 3.49e-05 | 50.00 | Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1 | [more] |
A0A2P5DTM2 | 4.62e-05 | 48.65 | CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 P... | [more] |
Match Name | E-value | Identity | Description | |
AT1G06225.1 | 8.5e-06 | 44.05 | CLAVATA3/ESR-RELATED 3 | [more] |