Cp4.1LG06g06660.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06660.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CLAVATA3/ESR-RELATED 3
Location	Cp4.1LG06: 4091983 .. 4092228 (-)
Sequence length	246
RNA-Seq Expression	Cp4.1LG06g06660.1
Synteny	Cp4.1LG06g06660.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATTATCATAAGTTCTTTTGCCTTGTGCTCATATTGTTCTTGTGTTCTTCCTCCATTTCCGAAAGTCGCTTGCTTTCTTCTTCTTCTTCTTTCTCTTCTTCGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCATCGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

mRNA sequence

ATGGCTTATTATCATAAGTTCTTTTGCCTTGTGCTCATATTGTTCTTGTGTTCTTCCTCCATTTCCGAAAGTCGCTTGCTTTCTTCTTCTTCTTCTTTCTCTTCTTCGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCATCGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Coding sequence (CDS)

ATGGCTTATTATCATAAGTTCTTTTGCCTTGTGCTCATATTGTTCTTGTGTTCTTCCTCCATTTCCGAAAGTCGCTTGCTTTCTTCTTCTTCTTCTTTCTCTTCTTCGGCGAATACGAAGAACGAGATCTTTGTAAAGAACGTCAAAGAACTCTTGAAGGTTATCATCGAAGAAAAAGAGAAGCTTGGACGACATTTCGTGTCCAAAAGACTCAGCCCTGGAGGACCTGATCCACGCCATCATTGA

Protein sequence

MAYYHKFFCLVLILFLCSSSISESRLLSSSSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH

Homology

[Close]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy Swiss-Prot
Match: Q3EDH8 (CLAVATA3/ESR (CLE)-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=CLE3 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 1  MAYYHKFFCLVLILFLCSSSISESRLLSSSSSFSSSANTK---NEIFVKNVKELLKVIIE 60
          MA    + CLVL+L L  +S+ E R L +   FS S+  K    E+F + +KE+      
Sbjct: 1  MASLKLWVCLVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELF-ERLKEMKGRSEG 60

Query: 61 EKEKLGRHFVSKRLSPGGPDPRHH 82
          E+  LG    SKRLSPGGPDPRHH
Sbjct: 61 EETILGNTLDSKRLSPGGPDPRHH 83

[Close]

BLAST of Cp4.1LG06g06660.1 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 101 bits (252), Expect = 4.90e-26
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 7  FFCLVLILFLCSSSISESRLLSS---SSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLG 66
          F+ LVLIL LCSS ISESRLLSS   S S SSS+N KNE+FVKN +E+LK IIEEKEKLG
Sbjct: 11 FWGLVLILLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLG 70

Query: 67 RHFVSKRLSPGGPDPRHH 81
          RHFVSKRLSPGGPDPRHH
Sbjct: 71 RHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of Cp4.1LG06g06660.1 vs. NCBI nr
Match: KAF7836665.1 (CLAVATA3/ESR (CLE)-related protein 1-like [Senna tora])

HSP 1 Score: 54.7 bits (130), Expect = 1.86e-07
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 10 LVLILFLCSSSISESRLLSSSSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSK 69
          L L+L   S SIS++R L SS S +S+ N  + +F +N K++LK II   + LG      
Sbjct: 20 LSLLLLSTSISISQARPLPSSFSNNSNGNQSHHVFKENAKQVLKEIIRRHQLLGEQNYPT 79

Query: 70 RLSPGGPDPRHH 81
          RLSPGGPDP HH
Sbjct: 80 RLSPGGPDPHHH 91

[Close]

BLAST of Cp4.1LG06g06660.1 vs. NCBI nr
Match: XP_031267366.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 53.5 bits (127), Expect = 7.04e-07
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 37  ANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
           +N +  + ++N KE+LK  ++ +E LG+ F SKRLSPGGPDPRHH
Sbjct: 60  SNDEGRVLMENAKEMLKDGVKRQEILGKFFDSKRLSPGGPDPRHH 104

[Close]

BLAST of Cp4.1LG06g06660.1 vs. NCBI nr
Match: XP_031265123.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 51.6 bits (122), Expect = 3.97e-06
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 33  FSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
           F   +N +  + ++N KE+LK  ++ +E LG+ F SKR+SPGGPDP HH
Sbjct: 56  FQQYSNDEGRVLMENAKEMLKDSVKRQEILGKFFDSKRVSPGGPDPHHH 104

[Close]

BLAST of Cp4.1LG06g06660.1 vs. NCBI nr
Match: KAE9617029.1 (hypothetical protein Lalb_Chr03g0031051 [Lupinus albus] >KAF1897280.1 hypothetical protein Lal_00034983 [Lupinus albus])

HSP 1 Score: 48.9 bits (115), Expect = 2.37e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 37 ANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
          +N +N  F ++VK++LK I   K+  G ++   RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75

[Close]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.37e-26
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 7  FFCLVLILFLCSSSISESRLLSS---SSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLG 66
          F+ LVLIL LCSS ISESRLLSS   S S SSS+N KNE+FVKN +E+LK IIEEKEKLG
Sbjct: 11 FWGLVLILLLCSS-ISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIEEKEKLG 70

Query: 67 RHFVSKRLSPGGPDPRHH 81
          RHFVSKRLSPGGPDPRHH
Sbjct: 71 RHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy TrEMBL
Match: A0A6A5PKV4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.15e-05
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 37 ANTKNEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
          +N +N  F ++VK++LK I   K+  G ++   RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75

[Close]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy TrEMBL
Match: A0A444Y3W2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.90e-05
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 41 NEIFVKNVKELLKVIIEEKEKLGRHFVSKRLSPGGPDPRHH 81
          + +FV+N K++LK II  K+ LG  +   RLSPGGP+P HH
Sbjct: 41 HRVFVENAKQMLKEIIRRKQLLGTQYKINRLSPGGPNPHHH 81

[Close]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy TrEMBL
Match: A0A6A4MZR2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.49e-05
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 35 SSANTKNEIFVKNVKELLKVIIEEKEKLG-RHFVSKRLSPGGPDPRHH 81
          S+ N  + IF+++ K++LK II  K+ LG  H+ + RLSPGGPDP HH
Sbjct: 31 SNNNENHAIFMESSKQVLKEIIRRKQLLGITHYETNRLSPGGPDPHHH 78

[Close]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy TrEMBL
Match: A0A2P5DTM2 (CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.62e-05
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 8  FCLVLILFLCSSSISESRLLSSSSSFSSSANTKNEIFVKNVKELLKVIIEEKEKLGRHFV 67
          F L LIL L S    E+R   S  SFS     K++I ++N K +LK  I  +   GR FV
Sbjct: 6  FLLCLILVLISFPNYETRPSPSPGSFSD--KPKHQILMENAKRVLKDSIARQN--GRRFV 65

Query: 68 SKRLSPGGPDPRHH 81
            RLSPGGPDPRHH
Sbjct: 66 PNRLSPGGPDPRHH 75

[Close]

BLAST of Cp4.1LG06g06660.1 vs. TAIR 10
Match: AT1G06225.1 (CLAVATA3/ESR-RELATED 3 )

HSP 1 Score: 47.0 bits (110), Expect = 8.5e-06
Identity = 37/84 (44.05%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 1  MAYYHKFFCLVLILFLCSSSISESRLLSSSSSFSSSANTK---NEIFVKNVKELLKVIIE 60
          MA    + CLVL+L L  +S+ E R L +   FS S+  K    E+F + +KE+      
Sbjct: 1  MASLKLWVCLVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELF-ERLKEMKGRSEG 60

Query: 61 EKEKLGRHFVSKRLSPGGPDPRHH 82
          E+  LG    SKRLSPGGPDPRHH
Sbjct: 61 EETILGNTLDSKRLSPGGPDPRHH 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06660.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3EDH8	1.2e-04	44.05	CLAVATA3/ESR (CLE)-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=CLE3 PE=...	[more]

BLAST of Cp4.1LG06g06660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55081.1	4.90e-26	79.49	hypothetical protein Csa_012463 [Cucumis sativus]	[more]
KAF7836665.1	1.86e-07	47.22	CLAVATA3/ESR (CLE)-related protein 1-like [Senna tora]	[more]
XP_031267366.1	7.04e-07	53.33	CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera]	[more]
XP_031265123.1	3.97e-06	46.94	CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera]	[more]
KAE9617029.1	2.37e-05	48.89	hypothetical protein Lalb_Chr03g0031051 [Lupinus albus] >KAF1897280.1 hypothetic...	[more]

BLAST of Cp4.1LG06g06660.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M1	2.37e-26	79.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1	[more]
A0A6A5PKV4	1.15e-05	48.89	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1	[more]
A0A444Y3W2	1.90e-05	51.22	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092417 PE=4 SV=1	[more]
A0A6A4MZR2	3.49e-05	50.00	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1	[more]
A0A2P5DTM2	4.62e-05	48.65	CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 P...	[more]

BLAST of Cp4.1LG06g06660.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06225.1	8.5e-06	44.05	CLAVATA3/ESR-RELATED 3	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG06g06660	Cp4.1LG06g06660	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06660.1:exon:001	Cp4.1LG06g06660.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06660.1:cds:001	Cp4.1LG06g06660.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g06660.1	Cp4.1LG06g06660.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0033612	receptor serine/threonine kinase binding