CmoCh02G012720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G012720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 7586561 .. 7587195 (-)
RNA-Seq Expression	CmoCh02G012720
Synteny	CmoCh02G012720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAAGAGGACCGGAGATCTGGTTCCGGCTCAGCAAAGCCCGGCTCAACATCCTCATATTCCCGAAATTTCGGGGTAACGTTCCGGAAATTTTGTTGTTTCGGAGGTCCAAATGCATCAAGTTCGGAAGCGCCGTAAGCGAAGCCGGAATTGAACCGGAAATCAAATTATCCGCCACGTTGAGCACCGTGAGTCGATGAAGCCGACCAATATCCGCCGGAAGGTCGCCGGAGAGACGGTTACCAATGAGGTCAAGAATTCTGAGGAACGGCAACGAAGTTATACACCTCGGAATCTCACCGGTGATTCCCTTCCAGTCAGCAATGATAACGCTGGAGAGACGAGTAAGCTTGCAGATGGCCGGAGAAATATACCCGGTCATAAAACCAGTACGGTGAGCCCGTTCGAAAATCGGATCCTCAGATTCGCCCCGGAGGTTAATATCGGCAACCCGGTGAGTCACTGGGTCACAGCTAACGCCGTACCATCGGTTGCAACAGTCGTCTCCGGTCCAGGAATTAAAGATCCCCAAATAGGGCTCCTTAAGGGCAGCTCTGAAAGCCAGAAGAGCTGCCCGTTCCGAAGGCGGGCAGCCATGAACCGCCGAGCCAACGGCCAAAACCAGTAA

mRNA sequence

ATGGAAGCGGGAAGAGGACCGGAGATCTGGTTCCGGCTCAGCAAAGCCCGGCTCAACATCCTCATATTCCCGAAATTTCGGGGTAACGTTCCGGAAATTTTGTTGTTTCGGAGGTCCAAATGCATCAAGTTCGGAAGCGCCGTAAGCGAAGCCGGAATTGAACCGGAAATCAAATTATCCGCCACGTTGAGCACCGAACGGCAACGAAGTTATACACCTCGGAATCTCACCGGTGATTCCCTTCCAGTCAGCAATGATAACGCTGGAGAGACGAGTAAGCTTGCAGATGGCCGGAGAAATATACCCGGTCATAAAACCAGTACGGTGAGCCCGTTCGAAAATCGGATCCTCAGATTCGCCCCGGAGGTTAATATCGGCAACCCGGTGAGTCACTGGGTCACAGCTAACGCCGTACCATCGGTTGCAACAGTCGTCTCCGGTCCAGGAATTAAAGATCCCCAAATAGGGCTCCTTAAGGGCAGCTCTGAAAGCCAGAAGAGCTGCCCGTTCCGAAGGCGGGCAGCCATGAACCGCCGAGCCAACGGCCAAAACCAGTAA

Coding sequence (CDS)

ATGGAAGCGGGAAGAGGACCGGAGATCTGGTTCCGGCTCAGCAAAGCCCGGCTCAACATCCTCATATTCCCGAAATTTCGGGGTAACGTTCCGGAAATTTTGTTGTTTCGGAGGTCCAAATGCATCAAGTTCGGAAGCGCCGTAAGCGAAGCCGGAATTGAACCGGAAATCAAATTATCCGCCACGTTGAGCACCGAACGGCAACGAAGTTATACACCTCGGAATCTCACCGGTGATTCCCTTCCAGTCAGCAATGATAACGCTGGAGAGACGAGTAAGCTTGCAGATGGCCGGAGAAATATACCCGGTCATAAAACCAGTACGGTGAGCCCGTTCGAAAATCGGATCCTCAGATTCGCCCCGGAGGTTAATATCGGCAACCCGGTGAGTCACTGGGTCACAGCTAACGCCGTACCATCGGTTGCAACAGTCGTCTCCGGTCCAGGAATTAAAGATCCCCAAATAGGGCTCCTTAAGGGCAGCTCTGAAAGCCAGAAGAGCTGCCCGTTCCGAAGGCGGGCAGCCATGAACCGCCGAGCCAACGGCCAAAACCAGTAA

Protein sequence

MEAGRGPEIWFRLSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYTPRNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWVTANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMNRRANGQNQ

Homology

[Close]

BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match: A0A0R0G3M2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G032900 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 74  RNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWV 133
           R+L G S PV + +AGET +LAD RR++ GH    V   E+R+LR A EV++G+     V
Sbjct: 16  RDLAGYSPPVGDCDAGETRQLADRRRDVAGHVAGAVGALEDRLLRLAAEVDVGDAAGLLV 75

Query: 134 TANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMNRRANGQNQ 186
            A+AVP +A V +GPG++D +IGL++         P RRR  ++  A G N+
Sbjct: 76  AAHAVPLMAAVGAGPGVEDSEIGLVERR-------PVRRRTRLHAGAQGHNK 120

[Close]

BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match: A0A5J5R983 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G069900v1 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 13  LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
           L+KARLNIL  P   G  PEILLF +SKCIKF   V+E GI P+  LSAT  T R+    
Sbjct: 4   LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63

Query: 73  PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
                  +LP+S   + E+     S++    R +     S V PF++ I+R    V++
Sbjct: 64  ------FNLPISAGISPESLLPIKSRMRRNGRLVMHLGISPVIPFQSAIVRLERRVSL 111

[Close]

BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match: A0A5D2CCV0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D05G074200v1 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 13  LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
           L+KARLNIL  P   G  PEILLF +SKCIKF   V+E GI P+  LSAT  T R+    
Sbjct: 4   LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63

Query: 73  PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
                  +LP+S   + E+     S++    R +     S V PF++ I+R    V++
Sbjct: 64  ------FNLPISAGISPESLLPIKSRMRRNGRLVMHLGISPVIPFQSAIVRLERRVSL 111

[Close]

BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match: A0A5D2KSY4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G075800v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 13  LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
           L+KARLNIL  P   G  PEILLF +SKCIKF   V+E GI P+  LSAT  T R+    
Sbjct: 4   LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63

Query: 73  PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
                  +LP+S   + E+     S++    R +     S V PF++ I+R    V++
Sbjct: 64  ------FNLPISAGISPESLLPIKSRMRRNVRLVMHLGISPVIPFQSAIVRLERRVSL 111

[Close]

BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match: A0A2P5EUL8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_150930 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 79  DSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWVTANAV 138
           D+LPV + +A E  + ADG  ++PGH   +V P ENR+L  + EV++ +P    V A+AV
Sbjct: 228 DALPVGDGDAREAGEAADGGGDVPGHVPGSVRPLENRVLGLSAEVDVRDPAGLRVAADAV 287

Query: 139 PSVATVVSGP 149
           P VA V  GP
Sbjct: 288 PVVAAVGPGP 297

[Close]

BLAST of CmoCh02G012720 vs. NCBI nr
Match: KAF5447831.1 (hypothetical protein F2P56_033351 [Juglans regia])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 64  STERQRSYTPRNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEV 123
           S +R+    P +L GDSLP+ NDN GE  + ADG  ++PGH T +V P E+ +L  + E 
Sbjct: 67  SEKRKVGDAPWDLAGDSLPIGNDNGGEAREPADGGGDVPGHVTGSVGPLEDGVLGLSTEG 126

Query: 124 NIGNPVSHWVTANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMN-RRANG 183
           ++G+P    V A+A+P VATV +GP ++D Q+GL++   E Q+ CP RRRA +N  R+NG
Sbjct: 127 DVGDPAGLRVAADAIPVVATVGAGPRVEDAQVGLVESCLEGQQCCPVRRRAPINDSRSNG 186

[Close]

BLAST of CmoCh02G012720 vs. NCBI nr
Match: KAG4955548.1 (hypothetical protein JHK85_041928 [Glycine max] >KAG5104289.1 hypothetical protein JHK82_041259 [Glycine max] >KAG5115416.1 hypothetical protein JHK84_041529 [Glycine max] >KRH10179.1 hypothetical protein GLYMA_15G032900v4 [Glycine max])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 74  RNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWV 133
           R+L G S PV + +AGET +LAD RR++ GH    V   E+R+LR A EV++G+     V
Sbjct: 16  RDLAGYSPPVGDCDAGETRQLADRRRDVAGHVAGAVGALEDRLLRLAAEVDVGDAAGLLV 75

Query: 134 TANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMNRRANGQNQ 186
            A+AVP +A V +GPG++D +IGL++         P RRR  ++  A G N+
Sbjct: 76  AAHAVPLMAAVGAGPGVEDSEIGLVERR-------PVRRRTRLHAGAQGHNK 120

[Close]

BLAST of CmoCh02G012720 vs. NCBI nr
Match: KAG6630218.1 (hypothetical protein CIPAW_13G003100 [Carya illinoinensis])

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-08
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 1   MEAGRGPEIWFRLSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLS 60
           M+AG  P  WF LS+ARL++  FPK  G  PEI L  RS+CI   S  S+AGI PEI LS
Sbjct: 80  MDAGIEPLSWFLLSRARLSMPSFPKSAGISPEIWLLLRSRCINLESPTSDAGIFPEIALS 139

Query: 61  ATLSTERQRSY 72
           A L T  + S+
Sbjct: 140 ARLRTVSRWSF 150

[Close]

BLAST of CmoCh02G012720 vs. NCBI nr
Match: KAF5445853.1 (hypothetical protein F2P56_031535 [Juglans regia])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1   MEAGRGPEIWFRLSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLS 60
           M+AG  P  WF LS ARL++  FPK  G  PEI L  RS+CI   S  S+AGI PEI LS
Sbjct: 106 MDAGIEPLSWFLLSSARLSMPSFPKSAGISPEIWLLLRSRCINLESPTSDAGIFPEIALS 165

Query: 61  ATLSTERQRSY 72
           A L T  + S+
Sbjct: 166 ARLRTVSRWSF 176

[Close]

BLAST of CmoCh02G012720 vs. NCBI nr
Match: KAB2027992.1 (hypothetical protein ES319_D05G069900v1 [Gossypium barbadense] >KAG4144986.1 hypothetical protein ERO13_D05G071101v2 [Gossypium hirsutum] >TYG67417.1 hypothetical protein ES288_D05G074200v1 [Gossypium darwinii])

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 13  LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
           L+KARLNIL  P   G  PEILLF +SKCIKF   V+E GI P+  LSAT  T R+    
Sbjct: 4   LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63

Query: 73  PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
                  +LP+S   + E+     S++    R +     S V PF++ I+R    V++
Sbjct: 64  ------FNLPISAGISPESLLPIKSRMRRNGRLVMHLGISPVIPFQSAIVRLERRVSL 111

The following BLAST results are available for this feature:

BLAST of CmoCh02G012720 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G012720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0R0G3M2	2.2e-12	41.96	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G032900 PE=4 SV=1	[more]
A0A5J5R983	1.8e-06	38.98	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G069900v1 PE...	[more]
A0A5D2CCV0	1.8e-06	38.98	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D05G074200v1 PE=...	[more]
A0A5D2KSY4	2.3e-06	38.98	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G075800v1 P...	[more]
A0A2P5EUL8	3.9e-06	44.29	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_150930 PE=4 SV...	[more]

BLAST of CmoCh02G012720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5447831.1	1.1e-18	45.00	hypothetical protein F2P56_033351 [Juglans regia]	[more]
KAG4955548.1	4.4e-12	41.96	hypothetical protein JHK85_041928 [Glycine max] >KAG5104289.1 hypothetical prote...	[more]
KAG6630218.1	8.7e-08	52.11	hypothetical protein CIPAW_13G003100 [Carya illinoinensis]	[more]
KAF5445853.1	1.5e-07	52.11	hypothetical protein F2P56_031535 [Juglans regia]	[more]
KAB2027992.1	3.6e-06	38.98	hypothetical protein ES319_D05G069900v1 [Gossypium barbadense] >KAG4144986.1 hyp...	[more]

BLAST of CmoCh02G012720 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G012720.1	CmoCh02G012720.1	mRNA