Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCGGGAAGAGGACCGGAGATCTGGTTCCGGCTCAGCAAAGCCCGGCTCAACATCCTCATATTCCCGAAATTTCGGGGTAACGTTCCGGAAATTTTGTTGTTTCGGAGGTCCAAATGCATCAAGTTCGGAAGCGCCGTAAGCGAAGCCGGAATTGAACCGGAAATCAAATTATCCGCCACGTTGAGCACCGTGAGTCGATGAAGCCGACCAATATCCGCCGGAAGGTCGCCGGAGAGACGGTTACCAATGAGGTCAAGAATTCTGAGGAACGGCAACGAAGTTATACACCTCGGAATCTCACCGGTGATTCCCTTCCAGTCAGCAATGATAACGCTGGAGAGACGAGTAAGCTTGCAGATGGCCGGAGAAATATACCCGGTCATAAAACCAGTACGGTGAGCCCGTTCGAAAATCGGATCCTCAGATTCGCCCCGGAGGTTAATATCGGCAACCCGGTGAGTCACTGGGTCACAGCTAACGCCGTACCATCGGTTGCAACAGTCGTCTCCGGTCCAGGAATTAAAGATCCCCAAATAGGGCTCCTTAAGGGCAGCTCTGAAAGCCAGAAGAGCTGCCCGTTCCGAAGGCGGGCAGCCATGAACCGCCGAGCCAACGGCCAAAACCAGTAA
mRNA sequence
ATGGAAGCGGGAAGAGGACCGGAGATCTGGTTCCGGCTCAGCAAAGCCCGGCTCAACATCCTCATATTCCCGAAATTTCGGGGTAACGTTCCGGAAATTTTGTTGTTTCGGAGGTCCAAATGCATCAAGTTCGGAAGCGCCGTAAGCGAAGCCGGAATTGAACCGGAAATCAAATTATCCGCCACGTTGAGCACCGAACGGCAACGAAGTTATACACCTCGGAATCTCACCGGTGATTCCCTTCCAGTCAGCAATGATAACGCTGGAGAGACGAGTAAGCTTGCAGATGGCCGGAGAAATATACCCGGTCATAAAACCAGTACGGTGAGCCCGTTCGAAAATCGGATCCTCAGATTCGCCCCGGAGGTTAATATCGGCAACCCGGTGAGTCACTGGGTCACAGCTAACGCCGTACCATCGGTTGCAACAGTCGTCTCCGGTCCAGGAATTAAAGATCCCCAAATAGGGCTCCTTAAGGGCAGCTCTGAAAGCCAGAAGAGCTGCCCGTTCCGAAGGCGGGCAGCCATGAACCGCCGAGCCAACGGCCAAAACCAGTAA
Coding sequence (CDS)
ATGGAAGCGGGAAGAGGACCGGAGATCTGGTTCCGGCTCAGCAAAGCCCGGCTCAACATCCTCATATTCCCGAAATTTCGGGGTAACGTTCCGGAAATTTTGTTGTTTCGGAGGTCCAAATGCATCAAGTTCGGAAGCGCCGTAAGCGAAGCCGGAATTGAACCGGAAATCAAATTATCCGCCACGTTGAGCACCGAACGGCAACGAAGTTATACACCTCGGAATCTCACCGGTGATTCCCTTCCAGTCAGCAATGATAACGCTGGAGAGACGAGTAAGCTTGCAGATGGCCGGAGAAATATACCCGGTCATAAAACCAGTACGGTGAGCCCGTTCGAAAATCGGATCCTCAGATTCGCCCCGGAGGTTAATATCGGCAACCCGGTGAGTCACTGGGTCACAGCTAACGCCGTACCATCGGTTGCAACAGTCGTCTCCGGTCCAGGAATTAAAGATCCCCAAATAGGGCTCCTTAAGGGCAGCTCTGAAAGCCAGAAGAGCTGCCCGTTCCGAAGGCGGGCAGCCATGAACCGCCGAGCCAACGGCCAAAACCAGTAA
Protein sequence
MEAGRGPEIWFRLSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYTPRNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWVTANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMNRRANGQNQ
Homology
BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match:
A0A0R0G3M2 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G032900 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query: 74 RNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWV 133
R+L G S PV + +AGET +LAD RR++ GH V E+R+LR A EV++G+ V
Sbjct: 16 RDLAGYSPPVGDCDAGETRQLADRRRDVAGHVAGAVGALEDRLLRLAAEVDVGDAAGLLV 75
Query: 134 TANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMNRRANGQNQ 186
A+AVP +A V +GPG++D +IGL++ P RRR ++ A G N+
Sbjct: 76 AAHAVPLMAAVGAGPGVEDSEIGLVERR-------PVRRRTRLHAGAQGHNK 120
BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match:
A0A5J5R983 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G069900v1 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 13 LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
L+KARLNIL P G PEILLF +SKCIKF V+E GI P+ LSAT T R+
Sbjct: 4 LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63
Query: 73 PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
+LP+S + E+ S++ R + S V PF++ I+R V++
Sbjct: 64 ------FNLPISAGISPESLLPIKSRMRRNGRLVMHLGISPVIPFQSAIVRLERRVSL 111
BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match:
A0A5D2CCV0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D05G074200v1 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 13 LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
L+KARLNIL P G PEILLF +SKCIKF V+E GI P+ LSAT T R+
Sbjct: 4 LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63
Query: 73 PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
+LP+S + E+ S++ R + S V PF++ I+R V++
Sbjct: 64 ------FNLPISAGISPESLLPIKSRMRRNGRLVMHLGISPVIPFQSAIVRLERRVSL 111
BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match:
A0A5D2KSY4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G075800v1 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 13 LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
L+KARLNIL P G PEILLF +SKCIKF V+E GI P+ LSAT T R+
Sbjct: 4 LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63
Query: 73 PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
+LP+S + E+ S++ R + S V PF++ I+R V++
Sbjct: 64 ------FNLPISAGISPESLLPIKSRMRRNVRLVMHLGISPVIPFQSAIVRLERRVSL 111
BLAST of CmoCh02G012720 vs. ExPASy TrEMBL
Match:
A0A2P5EUL8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_150930 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0
Query: 79 DSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWVTANAV 138
D+LPV + +A E + ADG ++PGH +V P ENR+L + EV++ +P V A+AV
Sbjct: 228 DALPVGDGDAREAGEAADGGGDVPGHVPGSVRPLENRVLGLSAEVDVRDPAGLRVAADAV 287
Query: 139 PSVATVVSGP 149
P VA V GP
Sbjct: 288 PVVAAVGPGP 297
BLAST of CmoCh02G012720 vs. NCBI nr
Match:
KAF5447831.1 (hypothetical protein F2P56_033351 [Juglans regia])
HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 0
Query: 64 STERQRSYTPRNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEV 123
S +R+ P +L GDSLP+ NDN GE + ADG ++PGH T +V P E+ +L + E
Sbjct: 67 SEKRKVGDAPWDLAGDSLPIGNDNGGEAREPADGGGDVPGHVTGSVGPLEDGVLGLSTEG 126
Query: 124 NIGNPVSHWVTANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMN-RRANG 183
++G+P V A+A+P VATV +GP ++D Q+GL++ E Q+ CP RRRA +N R+NG
Sbjct: 127 DVGDPAGLRVAADAIPVVATVGAGPRVEDAQVGLVESCLEGQQCCPVRRRAPINDSRSNG 186
BLAST of CmoCh02G012720 vs. NCBI nr
Match:
KAG4955548.1 (hypothetical protein JHK85_041928 [Glycine max] >KAG5104289.1 hypothetical protein JHK82_041259 [Glycine max] >KAG5115416.1 hypothetical protein JHK84_041529 [Glycine max] >KRH10179.1 hypothetical protein GLYMA_15G032900v4 [Glycine max])
HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 0
Query: 74 RNLTGDSLPVSNDNAGETSKLADGRRNIPGHKTSTVSPFENRILRFAPEVNIGNPVSHWV 133
R+L G S PV + +AGET +LAD RR++ GH V E+R+LR A EV++G+ V
Sbjct: 16 RDLAGYSPPVGDCDAGETRQLADRRRDVAGHVAGAVGALEDRLLRLAAEVDVGDAAGLLV 75
Query: 134 TANAVPSVATVVSGPGIKDPQIGLLKGSSESQKSCPFRRRAAMNRRANGQNQ 186
A+AVP +A V +GPG++D +IGL++ P RRR ++ A G N+
Sbjct: 76 AAHAVPLMAAVGAGPGVEDSEIGLVERR-------PVRRRTRLHAGAQGHNK 120
BLAST of CmoCh02G012720 vs. NCBI nr
Match:
KAG6630218.1 (hypothetical protein CIPAW_13G003100 [Carya illinoinensis])
HSP 1 Score: 68.2 bits (165), Expect = 8.7e-08
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 0
Query: 1 MEAGRGPEIWFRLSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLS 60
M+AG P WF LS+ARL++ FPK G PEI L RS+CI S S+AGI PEI LS
Sbjct: 80 MDAGIEPLSWFLLSRARLSMPSFPKSAGISPEIWLLLRSRCINLESPTSDAGIFPEIALS 139
Query: 61 ATLSTERQRSY 72
A L T + S+
Sbjct: 140 ARLRTVSRWSF 150
BLAST of CmoCh02G012720 vs. NCBI nr
Match:
KAF5445853.1 (hypothetical protein F2P56_031535 [Juglans regia])
HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0
Query: 1 MEAGRGPEIWFRLSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLS 60
M+AG P WF LS ARL++ FPK G PEI L RS+CI S S+AGI PEI LS
Sbjct: 106 MDAGIEPLSWFLLSSARLSMPSFPKSAGISPEIWLLLRSRCINLESPTSDAGIFPEIALS 165
Query: 61 ATLSTERQRSY 72
A L T + S+
Sbjct: 166 ARLRTVSRWSF 176
BLAST of CmoCh02G012720 vs. NCBI nr
Match:
KAB2027992.1 (hypothetical protein ES319_D05G069900v1 [Gossypium barbadense] >KAG4144986.1 hypothetical protein ERO13_D05G071101v2 [Gossypium hirsutum] >TYG67417.1 hypothetical protein ES288_D05G074200v1 [Gossypium darwinii])
HSP 1 Score: 62.8 bits (151), Expect = 3.6e-06
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 13 LSKARLNILIFPKFRGNVPEILLFRRSKCIKFGSAVSEAGIEPEIKLSATLSTERQRSYT 72
L+KARLNIL P G PEILLF +SKCIKF V+E GI P+ LSAT T R+
Sbjct: 4 LNKARLNILRSPALPGIGPEILLFLKSKCIKFDKLVNEDGILPDNWLSATFKTVRR---- 63
Query: 73 PRNLTGDSLPVSNDNAGET-----SKLADGRRNIPGHKTSTVSPFENRILRFAPEVNI 126
+LP+S + E+ S++ R + S V PF++ I+R V++
Sbjct: 64 ------FNLPISAGISPESLLPIKSRMRRNGRLVMHLGISPVIPFQSAIVRLERRVSL 111
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0R0G3M2 | 2.2e-12 | 41.96 | Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G032900 PE=4 SV=1 | [more] |
| A0A5J5R983 | 1.8e-06 | 38.98 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G069900v1 PE... | [more] |
| A0A5D2CCV0 | 1.8e-06 | 38.98 | Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D05G074200v1 PE=... | [more] |
| A0A5D2KSY4 | 2.3e-06 | 38.98 | Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G075800v1 P... | [more] |
| A0A2P5EUL8 | 3.9e-06 | 44.29 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_150930 PE=4 SV... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAF5447831.1 | 1.1e-18 | 45.00 | hypothetical protein F2P56_033351 [Juglans regia] | [more] |
| KAG4955548.1 | 4.4e-12 | 41.96 | hypothetical protein JHK85_041928 [Glycine max] >KAG5104289.1 hypothetical prote... | [more] |
| KAG6630218.1 | 8.7e-08 | 52.11 | hypothetical protein CIPAW_13G003100 [Carya illinoinensis] | [more] |
| KAF5445853.1 | 1.5e-07 | 52.11 | hypothetical protein F2P56_031535 [Juglans regia] | [more] |
| KAB2027992.1 | 3.6e-06 | 38.98 | hypothetical protein ES319_D05G069900v1 [Gossypium barbadense] >KAG4144986.1 hyp... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
