Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCAATCAAGCAAACGGACAACAATCTGAACAGGCATCCCTTGTCCCCAAGTTTCCATTTGCTTCCTGTCTTTAAATGACTCATTAACCCCCATCCCTCCTTCCACTCCCACTCCCACTCCCCCCACCATCTGTACAAGCCCAGGGTATTCCCGTACTTTCCAAAATAATGAAAATAAGAAGCTGATCAATCAAGCAAAGTTTTAGAACTTTTGAATCTCATCAGCGCATTGCAATAATATTTTTTTCTCCTTATAAATACCAAAGGGGAGACTCAGAGAAACCATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTAGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCAAAAAATGGTTTGTATTCTTTACATTTTCTCTGAATCCTAATAGGTAAAAGTTAGTTGGTTAGGATATTTGGAAGAATCAATGGTGACTTAAAAGGTAACCATGAAAATGAAATTTATAGTCTACCCCACTCCGATAAACTTGGAGTTTTGTACCGATATCAACTTAACTTGGATTAGGATCTATACACAATTACAAATACAAAAAAGAGTCGTATCCCATTGGAATTTCTATATGTATATAACTTATTATTATTGTTCAAATATTTTTGAACCCTAAACCTAACCACGCCAACATTTTCTACAGC
mRNA sequence
GACCAATCAAGCAAACGGACAACAATCTGAACAGGCATCCCTTGTCCCCAAGTTTCCATTTGCTTCCTGTCTTTAAATGACTCATTAACCCCCATCCCTCCTTCCACTCCCACTCCCACTCCCCCCACCATCTGTACAAGCCCAGGGTATTCCCGTACTTTCCAAAATAATGAAAATAAGAAGCTGATCAATCAAGCAAAGTTTTAGAACTTTTGAATCTCATCAGCGCATTGCAATAATATTTTTTTCTCCTTATAAATACCAAAGGGGAGACTCAGAGAAACCATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTAGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCAAAAAATGGTTTGTATTCTTTACATTTTCTCTGAATCCTAATAGGTAAAAGTTAGTTGGTTAGGATATTTGGAAGAATCAATGGTGACTTAAAAGGTAACCATGAAAATGAAATTTATAGTCTACCCCACTCCGATAAACTTGGAGTTTTGTACCGATATCAACTTAACTTGGATTAGGATCTATACACAATTACAAATACAAAAAAGAGTCGTATCCCATTGGAATTTCTATATGTATATAACTTATTATTATTGTTCAAATATTTTTGAACCCTAAACCTAACCACGCCAACATTTTCTACAGC
Coding sequence (CDS)
ATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTAGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA
Protein sequence
MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Homology
BLAST of Cmc12g0324961 vs. NCBI nr
Match:
KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])
HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG
Sbjct: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
BLAST of Cmc12g0324961 vs. NCBI nr
Match:
KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])
HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1 MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
BLAST of Cmc12g0324961 vs. NCBI nr
Match:
KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 3 IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62
IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 6 IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
Query: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
QVG+E+HG RAGE ILDYVAGRPE E YKYQ
Sbjct: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98
BLAST of Cmc12g0324961 vs. NCBI nr
Match:
KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 148.3 bits (373), Expect = 3.4e-32
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 3 IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62
IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 6 IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
Query: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
QVG+E+HG +AGE ILDYVAGRPE E YKYQ
Sbjct: 66 QVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98
BLAST of Cmc12g0324961 vs. NCBI nr
Match:
KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 122.1 bits (305), Expect = 2.6e-24
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLV-VMTAFG 60
MD+Q K+LQ+KDQITVVAAVSVVLSLF LAFFWPLFASTA LLV ++ AF
Sbjct: 132 MDVQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFR 191
Query: 61 GGFQVGSEIHGMR-AGEGILDYVAGRPENGENHYKYQ 96
GGFQVG++IHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 192 GGFQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218
BLAST of Cmc12g0324961 vs. ExPASy TrEMBL
Match:
A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG
Sbjct: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
BLAST of Cmc12g0324961 vs. ExPASy TrEMBL
Match:
A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1 MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
BLAST of Cmc12g0324961 vs. ExPASy TrEMBL
Match:
A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 3.6e-19
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDIQ KL+Q++ T+ S +++ +YVAPR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90 MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
G Q+ +E+HG +AG+G++DYVA RPE+ E K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184
BLAST of Cmc12g0324961 vs. ExPASy TrEMBL
Match:
A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDI KLLQ++ +T+ A V +VLSL +Y APR ++ILAFFWPLFASTAVLL+ + AFGG
Sbjct: 1 MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGG 60
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
Q +E HG +AG+GIL+YV G+PE+
Sbjct: 61 LSQFSTEAHGAKAGQGILEYVGGQPEH 87
BLAST of Cmc12g0324961 vs. ExPASy TrEMBL
Match:
I1MFR0 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G117900 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
MDI KLLQ++ IT+ VS+ SLF+Y AP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1 MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
++ +E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87
BLAST of Cmc12g0324961 vs. TAIR 10
Match:
AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
M+IQAKL++++ V VSV+++ VY APR L+ILA+FWPLFASTA L + FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181
Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENH 92
Q+ E GE ++DYVAGRPE+ +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208
BLAST of Cmc12g0324961 vs. TAIR 10
Match:
AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0
Query: 1 MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFG- 60
M+ + KLL+ K QI +S++ V +P FL++L++FWPLF STA+ L + F
Sbjct: 1 MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60
Query: 61 -GGFQVGSEI-----HGMR-AGEGILDYVAG 84
V S I G++ A EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0042343.1 | 2.8e-42 | 100.00 | hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546... | [more] |
| KGN64996.1 | 9.8e-40 | 93.68 | hypothetical protein Csa_022896 [Cucumis sativus] | [more] |
| KAG7012637.1 | 1.5e-32 | 83.87 | hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6573520.1 | 3.4e-32 | 82.80 | hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6583721.1 | 2.6e-24 | 72.16 | hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CU44 | 1.3e-42 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0LYI8 | 4.8e-40 | 93.68 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1 | [more] |
| A0A061GGG1 | 3.6e-19 | 51.58 | Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1 | [more] |
| A0A2N9EZM9 | 2.3e-18 | 59.77 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1 | [more] |
| I1MFR0 | 4.3e-17 | 58.62 | Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G117900 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G16400.1 | 1.4e-15 | 48.35 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
| AT3G13175.1 | 3.4e-06 | 39.56 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
