Cmc12g0324961.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc12g0324961.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr12: 14869309 .. 14870365 (+)
Sequence length	1057
RNA-Seq Expression	Cmc12g0324961.1
Synteny	Cmc12g0324961.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCAATCAAGCAAACGGACAACAATCTGAACAGGCATCCCTTGTCCCCAAGTTTCCATTTGCTTCCTGTCTTTAAATGACTCATTAACCCCCATCCCTCCTTCCACTCCCACTCCCACTCCCCCCACCATCTGTACAAGCCCAGGGTATTCCCGTACTTTCCAAAATAATGAAAATAAGAAGCTGATCAATCAAGCAAAGTTTTAGAACTTTTGAATCTCATCAGCGCATTGCAATAATATTTTTTTCTCCTTATAAATACCAAAGGGGAGACTCAGAGAAACCATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTAGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCAAAAAATGGTTTGTATTCTTTACATTTTCTCTGAATCCTAATAGGTAAAAGTTAGTTGGTTAGGATATTTGGAAGAATCAATGGTGACTTAAAAGGTAACCATGAAAATGAAATTTATAGTCTACCCCACTCCGATAAACTTGGAGTTTTGTACCGATATCAACTTAACTTGGATTAGGATCTATACACAATTACAAATACAAAAAAGAGTCGTATCCCATTGGAATTTCTATATGTATATAACTTATTATTATTGTTCAAATATTTTTGAACCCTAAACCTAACCACGCCAACATTTTCTACAGC

mRNA sequence

GACCAATCAAGCAAACGGACAACAATCTGAACAGGCATCCCTTGTCCCCAAGTTTCCATTTGCTTCCTGTCTTTAAATGACTCATTAACCCCCATCCCTCCTTCCACTCCCACTCCCACTCCCCCCACCATCTGTACAAGCCCAGGGTATTCCCGTACTTTCCAAAATAATGAAAATAAGAAGCTGATCAATCAAGCAAAGTTTTAGAACTTTTGAATCTCATCAGCGCATTGCAATAATATTTTTTTCTCCTTATAAATACCAAAGGGGAGACTCAGAGAAACCATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTAGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCAAAAAATGGTTTGTATTCTTTACATTTTCTCTGAATCCTAATAGGTAAAAGTTAGTTGGTTAGGATATTTGGAAGAATCAATGGTGACTTAAAAGGTAACCATGAAAATGAAATTTATAGTCTACCCCACTCCGATAAACTTGGAGTTTTGTACCGATATCAACTTAACTTGGATTAGGATCTATACACAATTACAAATACAAAAAAGAGTCGTATCCCATTGGAATTTCTATATGTATATAACTTATTATTATTGTTCAAATATTTTTGAACCCTAAACCTAACCACGCCAACATTTTCTACAGC

Coding sequence (CDS)

ATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTAGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ

Homology

[Close]

BLAST of Cmc12g0324961.1 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cmc12g0324961.1 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cmc12g0324961.1 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65

Query: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Cmc12g0324961.1 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-32
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65

Query: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          QVG+E+HG +AGE ILDYVAGRPE  E  YKYQ
Sbjct: 66 QVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Cmc12g0324961.1 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-24
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLV-VMTAFG 60
           MD+Q K+LQ+KDQITVVAAVSVVLSLF          LAFFWPLFASTA LLV ++ AF 
Sbjct: 132 MDVQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFR 191

Query: 61  GGFQVGSEIHGMR-AGEGILDYVAGRPENGENHYKYQ 96
           GGFQVG++IHG+R AGEGILDYVAGRPE G+NHYKY+
Sbjct: 192 GGFQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

[Close]

BLAST of Cmc12g0324961.1 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cmc12g0324961.1 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cmc12g0324961.1 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.6e-19
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           MDIQ KL+Q++   T+    S +++  +YVAPR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ +E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Cmc12g0324961.1 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  +T+ A V +VLSL +Y APR ++ILAFFWPLFASTAVLL+ + AFGG
Sbjct: 1  MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            Q  +E HG +AG+GIL+YV G+PE+
Sbjct: 61 LSQFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of Cmc12g0324961.1 vs. ExPASy TrEMBL
Match: I1MFR0 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  IT+   VS+  SLF+Y AP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            ++ +E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

[Close]

BLAST of Cmc12g0324961.1 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           M+IQAKL++++    V   VSV+++  VY APR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

[Close]

BLAST of Cmc12g0324961.1 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFG- 60
          M+ + KLL+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 -GGFQVGSEI-----HGMR-AGEGILDYVAG 84
               V S I      G++ A EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:

BLAST of Cmc12g0324961.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042343.1	2.8e-42	100.00	hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546...	[more]
KGN64996.1	9.8e-40	93.68	hypothetical protein Csa_022896 [Cucumis sativus]	[more]
KAG7012637.1	1.5e-32	83.87	hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573520.1	3.4e-32	82.80	hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583721.1	2.6e-24	72.16	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cmc12g0324961.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc12g0324961.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CU44	1.3e-42	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYI8	4.8e-40	93.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1	3.6e-19	51.58	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1	[more]
A0A2N9EZM9	2.3e-18	59.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]
I1MFR0	4.3e-17	58.62	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G117900 PE=4 SV=1	[more]

BLAST of Cmc12g0324961.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	1.4e-15	48.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	3.4e-06	39.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125:SF7	TRANSMEMBRANE PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc12g0324961	Cmc12g0324961	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc12g0324961.1-exon	Cmc12g0324961.1-exon-CMiso1.1chr12:14869309..14870365	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc12g0324961.1-five_prime_utr	Cmc12g0324961.1-five_prime_utr-CMiso1.1chr12:14869309..14869650	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc12g0324961.1-cds	Cmc12g0324961.1-cds-CMiso1.1chr12:14869651..14869938	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc12g0324961.1-three_prime_utr	Cmc12g0324961.1-three_prime_utr-CMiso1.1chr12:14869939..14870365	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc12g0324961.1	Cmc12g0324961.1-protein	polypeptide