Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTGTGGCATTGGACAAGTCTAGCGTGCAACTATATGACTAGGGATGCTATCGTGAGACAAGGCATGTGCACGTGAAGTGGCTTGTGACCAAACTTGGAGCGCCCATGGTGGGTGCACAACAAGTGTCACATGAGGTTAGCATGCGACTTAGCACCTTGATGGGGATTGTGCAGCAGCGTTCAACTTGTCTCTGCTCAGCCACGCACCAGGTGTGCCATTGTGCTATTGATAGGCAATTTTTTTGGGTTTTTTGAAATTTTGAGCAAAACTTAAAATTTTTAAGGATCAAGTTGATTAATTAGGAATTTATTTCTATAATTACAAGTCAAGAAGAGTAAGAGCAAGTCCTCAAGTCTGGAGGGATATGACTTAAAACTGTTAGTGACAAAACGAGTTTGAATTATGTTTTAAAACATGAAATTCTAGTTAAGTGATTTGAGCATGCTCTGAGTTATCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTTACTAAGTTATTTGCAATGTATAAGATTTAATCAAGCTTGAGTTTAAAAGCAAGAGAAAATCATGAATTTAAAACTAAGTTTTCAAGTATTTAAACACGAGTTATGATTTTGCAAAAGTATGTTGTAAGTATAAGTTTATGCAATAAGCAAAGCATGTTTTAAGCAATGTATGTTTTAGTATAAGAGTATAAGTTTAAGAAAGATGTTTGATCAAGTACGAAACTCGACCTGTTTTATAAATAAACATAATTTCAAGTATAAGAGTTTAAGAGGAAGTATTTAAATTAAGTAATAGGCAAGATGGCTAAGGAAGACTAACTTATTGTGTGCAAGTATAAGCTAAGAAGAGAGTCTAAATGAAAGACTAAGCAAGATATGTTATCTGTATGTTTTAAGTAAAGAATAGTAAAGCATGTCATTTGTTTAAAGGTAAGAGATTTCTTAAAGTTTCCAAGTTAAAATCTAAGCAAAAAGTTAAGCAAAGCTTATAGTAGAACAAGTATAAGTCTAAGTAAATAACTTAGCAAAGTTTAAGATCAATAAGCATGATTTTGAAGTAATTTAAGTTTAAAAGTATTTTTCTATCAATATAACTGTTTTACTTGAAAGAAAATGTTAGAAGTGATCATCTTTACAAATGCTTTATGCTTAAATCTATTAAAGATGTGTATGAGTGCAAATAGTGAGGTCTGGCTTCCCCAAATTACAAAATTAACAGTGAGATATGGTTTGCCCAAATCACATGAAAGAGAATGAGGACTACACTAGCAAAATCACGAGAATGATTATGAGAAGTGGGCTTACCGAACTCGCGAGTTAAACTAATAAGTTGTAAAATAGCAAATTCATTTAGACCACCATTGTCTGTATCGATTTATGTCTACCACAATGGGTTAGATGAGTTGCAGAGTAAAGTAGTATAATAGTTGATTTTAAGAATGTTTTATAAAAACTGAGAAATAAAGTTTAAGTTAAGTATAATGTTACAGTTGGTCACTCACTTAGCCTTTCAACTATCGTTTTCATAATATTTTCATTTCCTAGTTAATGATCGTGATCCTAGAGCTAAGCTTATTGCTGCCAGTCGTTTAGTTTGCCGAAGCGGGTTCAAGTTGTTGTTGTCCTTGATGGGCCTATGTACTATGTGTTTACATGGAGTAAGAGTTGGACAGCCAGTTTATTTAAAACAGAGTTTTATTAATTACAATATGTTTTGATAAGTTTTTCCATTGTGTTATAGCTAAGAAAGTTTTACTATGTTGTTGAACTTGTCTTTTAAGTAAAGCTTTTAAATTTTAGAACCTAACCTTGAGGGTGATATAATATATTTCATCAATGTTGTTATATGTCAAAATGTTTCTGGTTTTTTTTTTTTTGTTCAAATTATTAAATTACTCGAAACACCAATGATGAGTAACTGTTAAGTGATATCATTTTTATATGTATAATGAAATATAAAGCTTTTTTCATTGTTTGTTTCTTTGTACTTTGAGCATCAGAGATCATGAAAGTTTGCATCCGAAGTTGATTGAAGATGGCCTCAAGGGTAACATTTCTTTGCTTTGAGCTGATCTATATGTTGGGATGTGGCTACCATAAGTTGGTTGAACTTCTTGTTTGAGATTGTGGAAAATTCTCCATAAGATTTTCATAATCCTATTCTAACGTAAAGGAAGATTAGAAGAGGTCTATTATATTATTCTGCATTTAGGATTTCTTCCTTGGTATTTATTGCCATTGAATTATTTTTGTTTGTGTAGTTCCCCCAGTTTCTTCTGCCGAATTGAACTTGCTTTGCTTTCTATTTGTAATTTTGTTCTTTTTCAGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGGTAAGGCCTATCAAGTTAACAAGTATCTTTATTATATATTGGTTCTTTGTTGTTTGTATGTCTTTTACCCGATGGTCATATCGTTTTCAATTCTTTCTATTTGTTATATTGATTAAAATATGAATGTTTTCCCAAATTTCATGTCTTTAGTCACACTCGGGGCATGTAAGTATTGTTTTGAGAGTTAAAGTGTCCCTTAGACGCTTTTTTGAAAACTTTTTAGGTTGGTTTTGGATTTGAAAGTTACACTTAGGCCATGCATCTTGTTTAATTTGAACATTCACATTAAAATGGGACTTAAAAGACGTTGACAGTAAATATCTAGTAGTATGAAACTTTGTTATATTTAGTAAATATTTTGTTATATTTAAAAATGAGGTTAATACGAAAAGAAAAAAAGGATATTGTATTAAAAAGAATATAAGATATGAGTCGTGGATATACCATTTGTGAGGAGATTGAAATTGGGCAGCTGAATCACCACAGCATAAAACAAGCATGTCGGTGTGTATAGAGCCAGGATTTAAGGCAACAATTGCCATACCATCTGGTAGCCCTTTAGCAACACATTTAGTTAGTCCCTCAACTGCCCATTTGGAAGAACAATATGGTGCAAACTGCAAAATTAGTAATACCAAATACTCATAATATAAACTTTGTCATAATTATCAATAATAAATAAATGGATCATATAGTATATTGAATATAATATTGTCGTCTCAGCCTAGCTTACATCTTCATGAGCAGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGAATCATAAGGGGAACGAAATGTCTCAAAATATTAGCAATTCCTTTCACGTTTGTATCAATCACATTATCAAATTCTTCTGCTTCAAGTTCCCATATCTTTGCACTTCTATGTGCCAAACCTGCATTATTCACTGTGAA
mRNA sequence
TTGTGTGGCATTGGACAAGTCTAGCGTGCAACTATATGACTAGGGATGCTATCGTGAGACAAGGCATGTGCACGTGAAGTGGCTTGTGACCAAACTTGGAGCGCCCATGGTGGGTGCACAACAAGTGTCACATGAGGTTAGCATGCGACTTAGCACCTTGATGGGGATTGTGCAGCAGCGTTCAACTTGTCTCTGCTCAGCCACGCACCAGAGATCATGAAAGTTTGCATCCGAAGTTGATTGAAGATGGCCTCAAGGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGAATCATAAGGGGAACGAAATGTCTCAAAATATTAGCAATTCCTTTCACGTTTGTATCAATCACATTATCAAATTCTTCTGCTTCAAGTTCCCATATCTTTGCACTTCTATGTGCCAAACCTGCATTATTCACTGTGAA
Coding sequence (CDS)
ATGGCCTCAAGGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGA
Protein sequence
MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDILTIIPLLF
Homology
BLAST of Cmc04g0107161 vs. NCBI nr
Match:
XP_038689732.1 (obg-like ATPase 1 [Tripterygium wilfordii] >KAF5729286.1 obg-like ATPase 1-like [Tripterygium wilfordii])
HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. NCBI nr
Match:
XP_038711340.1 (obg-like ATPase 1 [Tripterygium wilfordii])
HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. NCBI nr
Match:
PON54788.1 (Ribosome-binding ATPase YchF/Obg-like ATPase [Parasponia andersonii])
HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0
Query: 4 RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
+VKA LEEGKDIRLGD K A+VEILNTFQLLTA+ L P D+
Sbjct: 190 KVKAWLEEGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236
BLAST of Cmc04g0107161 vs. NCBI nr
Match:
POO00993.1 (Ribosome-binding ATPase YchF/Obg-like ATPase [Trema orientale])
HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0
Query: 4 RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
+VKA LE+GKDIRLGD K A+VEILNTFQLLTA+ L P D+
Sbjct: 190 KVKAWLEDGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236
BLAST of Cmc04g0107161 vs. NCBI nr
Match:
XP_031249535.1 (obg-like ATPase 1 [Pistacia vera] >XP_031249536.1 obg-like ATPase 1 [Pistacia vera])
HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ ++KASLEEGKD+RLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQKIKASLEEGKDVRLGDWKAADIEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match:
B8BBN7 (Obg-like ATPase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28170 PE=3 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ +VKA LE+GKD+R GD K A++EILNTFQLLTA+
Sbjct: 187 LCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match:
Q6Z1J6 (Obg-like ATPase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YCHF1 PE=1 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ +VKA LE+GKD+R GD K A++EILNTFQLLTA+
Sbjct: 187 LCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match:
Q9SA73 (Obg-like ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=YchF1 PE=1 SV=1)
HSP 1 Score: 51.6 bits (122), Expect = 3.5e-06
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ +VKA LE+GKD+R GD K A++EILNTFQLL+A+
Sbjct: 187 LLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAK 223
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match:
A0A7J7C689 (Obg-like ATPase 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01449 PE=3 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match:
A0A2P5C167 (Obg-like ATPase 1 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192940 PE=3 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0
Query: 4 RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
+VKA LEEGKDIRLGD K A+VEILNTFQLLTA+ L P D+
Sbjct: 190 KVKAWLEEGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match:
A0A2P5FT69 (Obg-like ATPase 1 OS=Trema orientale OX=63057 GN=TorRG33x02_031760 PE=3 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 8.0e-06
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0
Query: 4 RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
+VKA LE+GKDIRLGD K A+VEILNTFQLLTA+ L P D+
Sbjct: 190 KVKAWLEDGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match:
Q9M7P3 (Obg-like ATPase 1 OS=Capsicum annuum OX=4072 GN=T459_04458 PE=2 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 4 RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
RVKASLEEGKD+RLGD K A++E+LNTFQLLTA+
Sbjct: 190 RVKASLEEGKDVRLGDWKAADIELLNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match:
A0A5D3C0N4 (Obg-like ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00400 PE=3 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0
Query: 4 RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+VKASLEEGKD+RLGD K A+VEILNTFQLLTA+
Sbjct: 190 KVKASLEEGKDVRLGDWKAADVEILNTFQLLTAK 223
BLAST of Cmc04g0107161 vs. TAIR 10
Match:
AT1G30580.1 (GTP binding )
HSP 1 Score: 51.6 bits (122), Expect = 2.5e-07
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0
Query: 1 MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
+ +VKA LE+GKD+R GD K A++EILNTFQLL+A+
Sbjct: 187 LLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAK 223
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038689732.1 | 5.7e-06 | 78.38 | obg-like ATPase 1 [Tripterygium wilfordii] >KAF5729286.1 obg-like ATPase 1-like ... | [more] |
| XP_038711340.1 | 5.7e-06 | 78.38 | obg-like ATPase 1 [Tripterygium wilfordii] | [more] |
| PON54788.1 | 7.4e-06 | 65.96 | Ribosome-binding ATPase YchF/Obg-like ATPase [Parasponia andersonii] | [more] |
| POO00993.1 | 1.7e-05 | 63.83 | Ribosome-binding ATPase YchF/Obg-like ATPase [Trema orientale] | [more] |
| XP_031249535.1 | 2.2e-05 | 70.27 | obg-like ATPase 1 [Pistacia vera] >XP_031249536.1 obg-like ATPase 1 [Pistacia ve... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| B8BBN7 | 5.3e-07 | 64.86 | Obg-like ATPase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28170 PE=3 SV=1 | [more] |
| Q6Z1J6 | 5.3e-07 | 64.86 | Obg-like ATPase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YCHF1 PE=1 SV=1 | [more] |
| Q9SA73 | 3.5e-06 | 62.16 | Obg-like ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=YchF1 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A7J7C689 | 2.7e-06 | 78.38 | Obg-like ATPase 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01449 PE=3 S... | [more] |
| A0A2P5C167 | 3.6e-06 | 65.96 | Obg-like ATPase 1 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192940 PE=3 SV=... | [more] |
| A0A2P5FT69 | 8.0e-06 | 63.83 | Obg-like ATPase 1 OS=Trema orientale OX=63057 GN=TorRG33x02_031760 PE=3 SV=1 | [more] |
| Q9M7P3 | 1.0e-05 | 79.41 | Obg-like ATPase 1 OS=Capsicum annuum OX=4072 GN=T459_04458 PE=2 SV=1 | [more] |
| A0A5D3C0N4 | 1.0e-05 | 82.35 | Obg-like ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00... | [more] |
