Cmc04g0107161.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc04g0107161.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Obg-like ATPase 1
Location	CMiso1.1chr04: 25533422 .. 25536820 (-)
Sequence length	560
RNA-Seq Expression	Cmc04g0107161.1
Synteny	Cmc04g0107161.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTGTGGCATTGGACAAGTCTAGCGTGCAACTATATGACTAGGGATGCTATCGTGAGACAAGGCATGTGCACGTGAAGTGGCTTGTGACCAAACTTGGAGCGCCCATGGTGGGTGCACAACAAGTGTCACATGAGGTTAGCATGCGACTTAGCACCTTGATGGGGATTGTGCAGCAGCGTTCAACTTGTCTCTGCTCAGCCACGCACCAGGTGTGCCATTGTGCTATTGATAGGCAATTTTTTTGGGTTTTTTGAAATTTTGAGCAAAACTTAAAATTTTTAAGGATCAAGTTGATTAATTAGGAATTTATTTCTATAATTACAAGTCAAGAAGAGTAAGAGCAAGTCCTCAAGTCTGGAGGGATATGACTTAAAACTGTTAGTGACAAAACGAGTTTGAATTATGTTTTAAAACATGAAATTCTAGTTAAGTGATTTGAGCATGCTCTGAGTTATCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTTACTAAGTTATTTGCAATGTATAAGATTTAATCAAGCTTGAGTTTAAAAGCAAGAGAAAATCATGAATTTAAAACTAAGTTTTCAAGTATTTAAACACGAGTTATGATTTTGCAAAAGTATGTTGTAAGTATAAGTTTATGCAATAAGCAAAGCATGTTTTAAGCAATGTATGTTTTAGTATAAGAGTATAAGTTTAAGAAAGATGTTTGATCAAGTACGAAACTCGACCTGTTTTATAAATAAACATAATTTCAAGTATAAGAGTTTAAGAGGAAGTATTTAAATTAAGTAATAGGCAAGATGGCTAAGGAAGACTAACTTATTGTGTGCAAGTATAAGCTAAGAAGAGAGTCTAAATGAAAGACTAAGCAAGATATGTTATCTGTATGTTTTAAGTAAAGAATAGTAAAGCATGTCATTTGTTTAAAGGTAAGAGATTTCTTAAAGTTTCCAAGTTAAAATCTAAGCAAAAAGTTAAGCAAAGCTTATAGTAGAACAAGTATAAGTCTAAGTAAATAACTTAGCAAAGTTTAAGATCAATAAGCATGATTTTGAAGTAATTTAAGTTTAAAAGTATTTTTCTATCAATATAACTGTTTTACTTGAAAGAAAATGTTAGAAGTGATCATCTTTACAAATGCTTTATGCTTAAATCTATTAAAGATGTGTATGAGTGCAAATAGTGAGGTCTGGCTTCCCCAAATTACAAAATTAACAGTGAGATATGGTTTGCCCAAATCACATGAAAGAGAATGAGGACTACACTAGCAAAATCACGAGAATGATTATGAGAAGTGGGCTTACCGAACTCGCGAGTTAAACTAATAAGTTGTAAAATAGCAAATTCATTTAGACCACCATTGTCTGTATCGATTTATGTCTACCACAATGGGTTAGATGAGTTGCAGAGTAAAGTAGTATAATAGTTGATTTTAAGAATGTTTTATAAAAACTGAGAAATAAAGTTTAAGTTAAGTATAATGTTACAGTTGGTCACTCACTTAGCCTTTCAACTATCGTTTTCATAATATTTTCATTTCCTAGTTAATGATCGTGATCCTAGAGCTAAGCTTATTGCTGCCAGTCGTTTAGTTTGCCGAAGCGGGTTCAAGTTGTTGTTGTCCTTGATGGGCCTATGTACTATGTGTTTACATGGAGTAAGAGTTGGACAGCCAGTTTATTTAAAACAGAGTTTTATTAATTACAATATGTTTTGATAAGTTTTTCCATTGTGTTATAGCTAAGAAAGTTTTACTATGTTGTTGAACTTGTCTTTTAAGTAAAGCTTTTAAATTTTAGAACCTAACCTTGAGGGTGATATAATATATTTCATCAATGTTGTTATATGTCAAAATGTTTCTGGTTTTTTTTTTTTTGTTCAAATTATTAAATTACTCGAAACACCAATGATGAGTAACTGTTAAGTGATATCATTTTTATATGTATAATGAAATATAAAGCTTTTTTCATTGTTTGTTTCTTTGTACTTTGAGCATCAGAGATCATGAAAGTTTGCATCCGAAGTTGATTGAAGATGGCCTCAAGGGTAACATTTCTTTGCTTTGAGCTGATCTATATGTTGGGATGTGGCTACCATAAGTTGGTTGAACTTCTTGTTTGAGATTGTGGAAAATTCTCCATAAGATTTTCATAATCCTATTCTAACGTAAAGGAAGATTAGAAGAGGTCTATTATATTATTCTGCATTTAGGATTTCTTCCTTGGTATTTATTGCCATTGAATTATTTTTGTTTGTGTAGTTCCCCCAGTTTCTTCTGCCGAATTGAACTTGCTTTGCTTTCTATTTGTAATTTTGTTCTTTTTCAGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGGTAAGGCCTATCAAGTTAACAAGTATCTTTATTATATATTGGTTCTTTGTTGTTTGTATGTCTTTTACCCGATGGTCATATCGTTTTCAATTCTTTCTATTTGTTATATTGATTAAAATATGAATGTTTTCCCAAATTTCATGTCTTTAGTCACACTCGGGGCATGTAAGTATTGTTTTGAGAGTTAAAGTGTCCCTTAGACGCTTTTTTGAAAACTTTTTAGGTTGGTTTTGGATTTGAAAGTTACACTTAGGCCATGCATCTTGTTTAATTTGAACATTCACATTAAAATGGGACTTAAAAGACGTTGACAGTAAATATCTAGTAGTATGAAACTTTGTTATATTTAGTAAATATTTTGTTATATTTAAAAATGAGGTTAATACGAAAAGAAAAAAAGGATATTGTATTAAAAAGAATATAAGATATGAGTCGTGGATATACCATTTGTGAGGAGATTGAAATTGGGCAGCTGAATCACCACAGCATAAAACAAGCATGTCGGTGTGTATAGAGCCAGGATTTAAGGCAACAATTGCCATACCATCTGGTAGCCCTTTAGCAACACATTTAGTTAGTCCCTCAACTGCCCATTTGGAAGAACAATATGGTGCAAACTGCAAAATTAGTAATACCAAATACTCATAATATAAACTTTGTCATAATTATCAATAATAAATAAATGGATCATATAGTATATTGAATATAATATTGTCGTCTCAGCCTAGCTTACATCTTCATGAGCAGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGAATCATAAGGGGAACGAAATGTCTCAAAATATTAGCAATTCCTTTCACGTTTGTATCAATCACATTATCAAATTCTTCTGCTTCAAGTTCCCATATCTTTGCACTTCTATGTGCCAAACCTGCATTATTCACTGTGAA

mRNA sequence

TTGTGTGGCATTGGACAAGTCTAGCGTGCAACTATATGACTAGGGATGCTATCGTGAGACAAGGCATGTGCACGTGAAGTGGCTTGTGACCAAACTTGGAGCGCCCATGGTGGGTGCACAACAAGTGTCACATGAGGTTAGCATGCGACTTAGCACCTTGATGGGGATTGTGCAGCAGCGTTCAACTTGTCTCTGCTCAGCCACGCACCAGAGATCATGAAAGTTTGCATCCGAAGTTGATTGAAGATGGCCTCAAGGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGAATCATAAGGGGAACGAAATGTCTCAAAATATTAGCAATTCCTTTCACGTTTGTATCAATCACATTATCAAATTCTTCTGCTTCAAGTTCCCATATCTTTGCACTTCTATGTGCCAAACCTGCATTATTCACTGTGAA

Coding sequence (CDS)

ATGGCCTCAAGGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGA

Protein sequence

MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDILTIIPLLF

Homology

[Close]

BLAST of Cmc04g0107161.1 vs. NCBI nr
Match: XP_038689732.1 (obg-like ATPase 1 [Tripterygium wilfordii] >KAF5729286.1 obg-like ATPase 1-like [Tripterygium wilfordii])

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. NCBI nr
Match: XP_038711340.1 (obg-like ATPase 1 [Tripterygium wilfordii])

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. NCBI nr
Match: PON54788.1 (Ribosome-binding ATPase YchF/Obg-like ATPase [Parasponia andersonii])

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LEEGKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEEGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]

BLAST of Cmc04g0107161.1 vs. NCBI nr
Match: POO00993.1 (Ribosome-binding ATPase YchF/Obg-like ATPase [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LE+GKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEDGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]

BLAST of Cmc04g0107161.1 vs. NCBI nr
Match: XP_031249535.1 (obg-like ATPase 1 [Pistacia vera] >XP_031249536.1 obg-like ATPase 1 [Pistacia vera])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  ++KASLEEGKD+RLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQKIKASLEEGKDVRLGDWKAADIEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy Swiss-Prot
Match: B8BBN7 (Obg-like ATPase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28170 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLLTA+
Sbjct: 187 LCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy Swiss-Prot
Match: Q6Z1J6 (Obg-like ATPase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YCHF1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLLTA+
Sbjct: 187 LCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy Swiss-Prot
Match: Q9SA73 (Obg-like ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=YchF1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-06
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLL+A+
Sbjct: 187 LLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy TrEMBL
Match: A0A7J7C689 (Obg-like ATPase 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01449 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy TrEMBL
Match: A0A2P5C167 (Obg-like ATPase 1 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192940 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LEEGKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEEGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy TrEMBL
Match: A0A2P5FT69 (Obg-like ATPase 1 OS=Trema orientale OX=63057 GN=TorRG33x02_031760 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.0e-06
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LE+GKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEDGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy TrEMBL
Match: Q9M7P3 (Obg-like ATPase 1 OS=Capsicum annuum OX=4072 GN=T459_04458 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           RVKASLEEGKD+RLGD K A++E+LNTFQLLTA+
Sbjct: 190 RVKASLEEGKDVRLGDWKAADIELLNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. ExPASy TrEMBL
Match: A0A5D3C0N4 (Obg-like ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00400 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +VKASLEEGKD+RLGD K A+VEILNTFQLLTA+
Sbjct: 190 KVKASLEEGKDVRLGDWKAADVEILNTFQLLTAK 223

[Close]

BLAST of Cmc04g0107161.1 vs. TAIR 10
Match: AT1G30580.1 (GTP binding )

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-07
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLL+A+
Sbjct: 187 LLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAK 223

The following BLAST results are available for this feature:

BLAST of Cmc04g0107161.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038689732.1	5.7e-06	78.38	obg-like ATPase 1 [Tripterygium wilfordii] >KAF5729286.1 obg-like ATPase 1-like ...	[more]
XP_038711340.1	5.7e-06	78.38	obg-like ATPase 1 [Tripterygium wilfordii]	[more]
PON54788.1	7.4e-06	65.96	Ribosome-binding ATPase YchF/Obg-like ATPase [Parasponia andersonii]	[more]
POO00993.1	1.7e-05	63.83	Ribosome-binding ATPase YchF/Obg-like ATPase [Trema orientale]	[more]
XP_031249535.1	2.2e-05	70.27	obg-like ATPase 1 [Pistacia vera] >XP_031249536.1 obg-like ATPase 1 [Pistacia ve...	[more]

BLAST of Cmc04g0107161.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8BBN7	5.3e-07	64.86	Obg-like ATPase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28170 PE=3 SV=1	[more]
Q6Z1J6	5.3e-07	64.86	Obg-like ATPase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YCHF1 PE=1 SV=1	[more]
Q9SA73	3.5e-06	62.16	Obg-like ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=YchF1 PE=1 SV=1	[more]

BLAST of Cmc04g0107161.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7C689	2.7e-06	78.38	Obg-like ATPase 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01449 PE=3 S...	[more]
A0A2P5C167	3.6e-06	65.96	Obg-like ATPase 1 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192940 PE=3 SV=...	[more]
A0A2P5FT69	8.0e-06	63.83	Obg-like ATPase 1 OS=Trema orientale OX=63057 GN=TorRG33x02_031760 PE=3 SV=1	[more]
Q9M7P3	1.0e-05	79.41	Obg-like ATPase 1 OS=Capsicum annuum OX=4072 GN=T459_04458 PE=2 SV=1	[more]
A0A5D3C0N4	1.0e-05	82.35	Obg-like ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00...	[more]

BLAST of Cmc04g0107161.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30580.1	2.5e-07	62.16	GTP binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023192	TGS-like domain superfamily	GENE3D	1.10.150.300		coord: 1..37 e-value: 5.6E-5 score: 25.7

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc04g0107161	Cmc04g0107161	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107161.1-exon	Cmc04g0107161.1-exon-CMiso1.1chr04:25533422..25533608	exon
Cmc04g0107161.1-exon	Cmc04g0107161.1-exon-CMiso1.1chr04:25534356..25534470	exon
Cmc04g0107161.1-exon	Cmc04g0107161.1-exon-CMiso1.1chr04:25534752..25534798	exon
Cmc04g0107161.1-exon	Cmc04g0107161.1-exon-CMiso1.1chr04:25536610..25536820	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107161.1-three_prime_utr	Cmc04g0107161.1-three_prime_utr-CMiso1.1chr04:25533422..25533558	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107161.1-cds	Cmc04g0107161.1-cds-CMiso1.1chr04:25533559..25533608	CDS
Cmc04g0107161.1-cds	Cmc04g0107161.1-cds-CMiso1.1chr04:25534356..25534470	CDS
Cmc04g0107161.1-cds	Cmc04g0107161.1-cds-CMiso1.1chr04:25534752..25534763	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107161.1-five_prime_utr	Cmc04g0107161.1-five_prime_utr-CMiso1.1chr04:25534764..25534798	five_prime_UTR
Cmc04g0107161.1-five_prime_utr	Cmc04g0107161.1-five_prime_utr-CMiso1.1chr04:25536610..25536820	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc04g0107161.1	Cmc04g0107161.1-protein	polypeptide