Cmc04g0107161 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0107161
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionObg-like ATPase 1
LocationCMiso1.1chr04: 25533422 .. 25536820 (-)
RNA-Seq ExpressionCmc04g0107161
SyntenyCmc04g0107161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTGTGGCATTGGACAAGTCTAGCGTGCAACTATATGACTAGGGATGCTATCGTGAGACAAGGCATGTGCACGTGAAGTGGCTTGTGACCAAACTTGGAGCGCCCATGGTGGGTGCACAACAAGTGTCACATGAGGTTAGCATGCGACTTAGCACCTTGATGGGGATTGTGCAGCAGCGTTCAACTTGTCTCTGCTCAGCCACGCACCAGGTGTGCCATTGTGCTATTGATAGGCAATTTTTTTGGGTTTTTTGAAATTTTGAGCAAAACTTAAAATTTTTAAGGATCAAGTTGATTAATTAGGAATTTATTTCTATAATTACAAGTCAAGAAGAGTAAGAGCAAGTCCTCAAGTCTGGAGGGATATGACTTAAAACTGTTAGTGACAAAACGAGTTTGAATTATGTTTTAAAACATGAAATTCTAGTTAAGTGATTTGAGCATGCTCTGAGTTATCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTCTGAATATGGTTTTACTAAGTTATTTGCAATGTATAAGATTTAATCAAGCTTGAGTTTAAAAGCAAGAGAAAATCATGAATTTAAAACTAAGTTTTCAAGTATTTAAACACGAGTTATGATTTTGCAAAAGTATGTTGTAAGTATAAGTTTATGCAATAAGCAAAGCATGTTTTAAGCAATGTATGTTTTAGTATAAGAGTATAAGTTTAAGAAAGATGTTTGATCAAGTACGAAACTCGACCTGTTTTATAAATAAACATAATTTCAAGTATAAGAGTTTAAGAGGAAGTATTTAAATTAAGTAATAGGCAAGATGGCTAAGGAAGACTAACTTATTGTGTGCAAGTATAAGCTAAGAAGAGAGTCTAAATGAAAGACTAAGCAAGATATGTTATCTGTATGTTTTAAGTAAAGAATAGTAAAGCATGTCATTTGTTTAAAGGTAAGAGATTTCTTAAAGTTTCCAAGTTAAAATCTAAGCAAAAAGTTAAGCAAAGCTTATAGTAGAACAAGTATAAGTCTAAGTAAATAACTTAGCAAAGTTTAAGATCAATAAGCATGATTTTGAAGTAATTTAAGTTTAAAAGTATTTTTCTATCAATATAACTGTTTTACTTGAAAGAAAATGTTAGAAGTGATCATCTTTACAAATGCTTTATGCTTAAATCTATTAAAGATGTGTATGAGTGCAAATAGTGAGGTCTGGCTTCCCCAAATTACAAAATTAACAGTGAGATATGGTTTGCCCAAATCACATGAAAGAGAATGAGGACTACACTAGCAAAATCACGAGAATGATTATGAGAAGTGGGCTTACCGAACTCGCGAGTTAAACTAATAAGTTGTAAAATAGCAAATTCATTTAGACCACCATTGTCTGTATCGATTTATGTCTACCACAATGGGTTAGATGAGTTGCAGAGTAAAGTAGTATAATAGTTGATTTTAAGAATGTTTTATAAAAACTGAGAAATAAAGTTTAAGTTAAGTATAATGTTACAGTTGGTCACTCACTTAGCCTTTCAACTATCGTTTTCATAATATTTTCATTTCCTAGTTAATGATCGTGATCCTAGAGCTAAGCTTATTGCTGCCAGTCGTTTAGTTTGCCGAAGCGGGTTCAAGTTGTTGTTGTCCTTGATGGGCCTATGTACTATGTGTTTACATGGAGTAAGAGTTGGACAGCCAGTTTATTTAAAACAGAGTTTTATTAATTACAATATGTTTTGATAAGTTTTTCCATTGTGTTATAGCTAAGAAAGTTTTACTATGTTGTTGAACTTGTCTTTTAAGTAAAGCTTTTAAATTTTAGAACCTAACCTTGAGGGTGATATAATATATTTCATCAATGTTGTTATATGTCAAAATGTTTCTGGTTTTTTTTTTTTTGTTCAAATTATTAAATTACTCGAAACACCAATGATGAGTAACTGTTAAGTGATATCATTTTTATATGTATAATGAAATATAAAGCTTTTTTCATTGTTTGTTTCTTTGTACTTTGAGCATCAGAGATCATGAAAGTTTGCATCCGAAGTTGATTGAAGATGGCCTCAAGGGTAACATTTCTTTGCTTTGAGCTGATCTATATGTTGGGATGTGGCTACCATAAGTTGGTTGAACTTCTTGTTTGAGATTGTGGAAAATTCTCCATAAGATTTTCATAATCCTATTCTAACGTAAAGGAAGATTAGAAGAGGTCTATTATATTATTCTGCATTTAGGATTTCTTCCTTGGTATTTATTGCCATTGAATTATTTTTGTTTGTGTAGTTCCCCCAGTTTCTTCTGCCGAATTGAACTTGCTTTGCTTTCTATTTGTAATTTTGTTCTTTTTCAGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGGTAAGGCCTATCAAGTTAACAAGTATCTTTATTATATATTGGTTCTTTGTTGTTTGTATGTCTTTTACCCGATGGTCATATCGTTTTCAATTCTTTCTATTTGTTATATTGATTAAAATATGAATGTTTTCCCAAATTTCATGTCTTTAGTCACACTCGGGGCATGTAAGTATTGTTTTGAGAGTTAAAGTGTCCCTTAGACGCTTTTTTGAAAACTTTTTAGGTTGGTTTTGGATTTGAAAGTTACACTTAGGCCATGCATCTTGTTTAATTTGAACATTCACATTAAAATGGGACTTAAAAGACGTTGACAGTAAATATCTAGTAGTATGAAACTTTGTTATATTTAGTAAATATTTTGTTATATTTAAAAATGAGGTTAATACGAAAAGAAAAAAAGGATATTGTATTAAAAAGAATATAAGATATGAGTCGTGGATATACCATTTGTGAGGAGATTGAAATTGGGCAGCTGAATCACCACAGCATAAAACAAGCATGTCGGTGTGTATAGAGCCAGGATTTAAGGCAACAATTGCCATACCATCTGGTAGCCCTTTAGCAACACATTTAGTTAGTCCCTCAACTGCCCATTTGGAAGAACAATATGGTGCAAACTGCAAAATTAGTAATACCAAATACTCATAATATAAACTTTGTCATAATTATCAATAATAAATAAATGGATCATATAGTATATTGAATATAATATTGTCGTCTCAGCCTAGCTTACATCTTCATGAGCAGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGAATCATAAGGGGAACGAAATGTCTCAAAATATTAGCAATTCCTTTCACGTTTGTATCAATCACATTATCAAATTCTTCTGCTTCAAGTTCCCATATCTTTGCACTTCTATGTGCCAAACCTGCATTATTCACTGTGAA

mRNA sequence

TTGTGTGGCATTGGACAAGTCTAGCGTGCAACTATATGACTAGGGATGCTATCGTGAGACAAGGCATGTGCACGTGAAGTGGCTTGTGACCAAACTTGGAGCGCCCATGGTGGGTGCACAACAAGTGTCACATGAGGTTAGCATGCGACTTAGCACCTTGATGGGGATTGTGCAGCAGCGTTCAACTTGTCTCTGCTCAGCCACGCACCAGAGATCATGAAAGTTTGCATCCGAAGTTGATTGAAGATGGCCTCAAGGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGAATCATAAGGGGAACGAAATGTCTCAAAATATTAGCAATTCCTTTCACGTTTGTATCAATCACATTATCAAATTCTTCTGCTTCAAGTTCCCATATCTTTGCACTTCTATGTGCCAAACCTGCATTATTCACTGTGAA

Coding sequence (CDS)

ATGGCCTCAAGGGTCAAGGCATCGCTTGAGGAAGGTAAAGATATTCGTTTAGGTGATGGGAAACCTGCTAATGTCGAGATTCTCAATACTTTTCAATTGCTCACCGCCCAAGCCTATTGTTTACTTGATCTTCCAGCACCAGAAGACATATTGACAATAATTCCATTGTTGTTTTGA

Protein sequence

MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDILTIIPLLF
Homology
[Close]
BLAST of Cmc04g0107161 vs. NCBI nr
Match: XP_038689732.1 (obg-like ATPase 1 [Tripterygium wilfordii] >KAF5729286.1 obg-like ATPase 1-like [Tripterygium wilfordii])

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. NCBI nr
Match: XP_038711340.1 (obg-like ATPase 1 [Tripterygium wilfordii])

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. NCBI nr
Match: PON54788.1 (Ribosome-binding ATPase YchF/Obg-like ATPase [Parasponia andersonii])

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LEEGKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEEGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]
BLAST of Cmc04g0107161 vs. NCBI nr
Match: POO00993.1 (Ribosome-binding ATPase YchF/Obg-like ATPase [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LE+GKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEDGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]
BLAST of Cmc04g0107161 vs. NCBI nr
Match: XP_031249535.1 (obg-like ATPase 1 [Pistacia vera] >XP_031249536.1 obg-like ATPase 1 [Pistacia vera])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  ++KASLEEGKD+RLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQKIKASLEEGKDVRLGDWKAADIEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match: B8BBN7 (Obg-like ATPase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28170 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLLTA+
Sbjct: 187 LCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match: Q6Z1J6 (Obg-like ATPase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YCHF1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-07
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLLTA+
Sbjct: 187 LCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match: Q9SA73 (Obg-like ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=YchF1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.5e-06
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLL+A+
Sbjct: 187 LLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAK 223

[Close]
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match: A0A7J7C689 (Obg-like ATPase 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01449 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  RVKASLEEGKDIRLGD K A++EILNTFQLLTA+
Sbjct: 187 LCQRVKASLEEGKDIRLGDWKAADIEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match: A0A2P5C167 (Obg-like ATPase 1 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192940 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LEEGKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEEGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match: A0A2P5FT69 (Obg-like ATPase 1 OS=Trema orientale OX=63057 GN=TorRG33x02_031760 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.0e-06
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQAYCLLDLPAPEDI 51
           +VKA LE+GKDIRLGD K A+VEILNTFQLLTA+    L  P   D+
Sbjct: 190 KVKAWLEDGKDIRLGDWKAADVEILNTFQLLTAKPVVYLVFPERSDV 236

[Close]
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match: Q9M7P3 (Obg-like ATPase 1 OS=Capsicum annuum OX=4072 GN=T459_04458 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           RVKASLEEGKD+RLGD K A++E+LNTFQLLTA+
Sbjct: 190 RVKASLEEGKDVRLGDWKAADIELLNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match: A0A5D3C0N4 (Obg-like ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00400 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 4   RVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +VKASLEEGKD+RLGD K A+VEILNTFQLLTA+
Sbjct: 190 KVKASLEEGKDVRLGDWKAADVEILNTFQLLTAK 223

[Close]
BLAST of Cmc04g0107161 vs. TAIR 10
Match: AT1G30580.1 (GTP binding )

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-07
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 0 

Query: 1   MASRVKASLEEGKDIRLGDGKPANVEILNTFQLLTAQ 38
           +  +VKA LE+GKD+R GD K A++EILNTFQLL+A+
Sbjct: 187 LLQKVKAWLEDGKDVRFGDWKTADIEILNTFQLLSAK 223

The following BLAST results are available for this feature:
BLAST of Cmc04g0107161 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038689732.15.7e-0678.38obg-like ATPase 1 [Tripterygium wilfordii] >KAF5729286.1 obg-like ATPase 1-like ... [more]
XP_038711340.15.7e-0678.38obg-like ATPase 1 [Tripterygium wilfordii][more]
PON54788.17.4e-0665.96Ribosome-binding ATPase YchF/Obg-like ATPase [Parasponia andersonii][more]
POO00993.11.7e-0563.83Ribosome-binding ATPase YchF/Obg-like ATPase [Trema orientale][more]
XP_031249535.12.2e-0570.27obg-like ATPase 1 [Pistacia vera] >XP_031249536.1 obg-like ATPase 1 [Pistacia ve... [more]
BLAST of Cmc04g0107161 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B8BBN75.3e-0764.86Obg-like ATPase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28170 PE=3 SV=1[more]
Q6Z1J65.3e-0764.86Obg-like ATPase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=YCHF1 PE=1 SV=1[more]
Q9SA733.5e-0662.16Obg-like ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=YchF1 PE=1 SV=1[more]
BLAST of Cmc04g0107161 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J7C6892.7e-0678.38Obg-like ATPase 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01449 PE=3 S... [more]
A0A2P5C1673.6e-0665.96Obg-like ATPase 1 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192940 PE=3 SV=... [more]
A0A2P5FT698.0e-0663.83Obg-like ATPase 1 OS=Trema orientale OX=63057 GN=TorRG33x02_031760 PE=3 SV=1[more]
Q9M7P31.0e-0579.41Obg-like ATPase 1 OS=Capsicum annuum OX=4072 GN=T459_04458 PE=2 SV=1[more]
A0A5D3C0N41.0e-0582.35Obg-like ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00... [more]
BLAST of Cmc04g0107161 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30580.12.5e-0762.16GTP binding [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023192TGS-like domain superfamilyGENE3D1.10.150.300coord: 1..37
e-value: 5.6E-5
score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0107161.1Cmc04g0107161.1mRNA