Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCACTGAACAGCTTCCATGGCTTCCTCTCCCTTTTCTTCTCTCTGCCTCGCCAGAAATTCCACTCCTTGCACAAGTGCAATCGGATCTCGACCTTCCCACAGGTTCAATTTCACTACCTTCGGAATCGGAGCGCCGATCACTAAGAGAATTAGGTCTCCGTTTGCAGAGCTGCCTCCCTCGCCTTTCGCGACCTTGATGCCGACGATTTCCGCCATTCTCTCGATAAGCAGGTTCAAAGATTTTCTCATTTTCTTACTGAATTCATGACTACGTCGTTTCTGAGATTGATGAAACCAGTTATGTCTTAGGGCGAGGCGAGGATAGTTTCTTGTTAGCTACGGAAGCGGATTTCTTTTAGCTTTACCTCCAACTGCTATGAGAATGATTATCGATTCTTCCTAGATTATGCGCATGTTCTCTTTAATACGTGAAGATTTGTTATCTTCGAGGGCTGCAGGTTTCTCTTATTGTTGCTGAATGACGAGGAAAAAAGGACTAGAAAAATTAAGAGATCAAATAGAAGGAATTGATTGGAGAGGGAGAGTTACAGTGGGAAGGATGTAAGAAAATAGAACTCAACCAAAAAAATTTAGCTCTTCTACTTGGAGCTCTTCCTAAACCAGTCTGACTTGTTCTACTTTCGTCTGGCCAGTATAGTAAACAAAATAAGATTATGATCTGTCATCGTTTCTTATAATAATTGTGATAGAAGCGTAGCTGGCATCACATGCAGAATTCGGAGGTACATACCACGGCAGAAAATAGTATCCTAATGTAATCTAAACAAATATAATCTTTGTAATTCATTTTTTTTACGATATAGAAATTCAAGCTTGGATCTGGTGTTGTGTTACCAATTTTATAGCTTTGGAACTAGAGTGAATTGATCTTTTCAATTCATTCTTTCAGCCCGCAAGAAGTTCTCATAACCAATAGGGAGTCAGCTGTCTTTCTGGATTATGATTCAACAATTAATACATCATAATCAAGTCTCTACATCTTAAAGAAAAAACTAAATCATAGTTTAGAAGTCTAATAAAAGAATTCATACCCAATTTGAAATTAAGCTCAATGGTATACCCTCTGATGTTATGGCAATATCCTTATTTATTATTATTTTGATATTTTGATAATACTTATGTTAATATCATTCTGAGTCAGCTACCTCATTGCTTAAGTCAAGAATTTTCTTTCATGCAGAATACAATGA
mRNA sequence
AAACCACTGAACAGCTTCCATGGCTTCCTCTCCCTTTTCTTCTCTCTGCCTCGCCAGAAATTCCACTCCTTGCACAAGTGCAATCGGATCTCGACCTTCCCACAGGTTCAATTTCACTACCTTCGGAATCGGAGCGCCGATCACTAAGAGAATTAGGTCTCCGTTTGCAGAGCTGCCTCCCTCGCCTTTCGCGACCTTGATGCCGACGATTTCCGCCATTCTCTCGATAAGCAGAATACAATGA
Coding sequence (CDS)
ATGGCTTCCTCTCCCTTTTCTTCTCTCTGCCTCGCCAGAAATTCCACTCCTTGCACAAGTGCAATCGGATCTCGACCTTCCCACAGGTTCAATTTCACTACCTTCGGAATCGGAGCGCCGATCACTAAGAGAATTAGGTCTCCGTTTGCAGAGCTGCCTCCCTCGCCTTTCGCGACCTTGATGCCGACGATTTCCGCCATTCTCTCGATAAGCAGAATACAATGA
Protein sequence
MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRSPFAELPPSPFATLMPTISAILSISRIQ
Homology
BLAST of CmaCh14G007140 vs. ExPASy TrEMBL
Match:
A0A6J1FAF3 (Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSL LARNSTPCT IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45
BLAST of CmaCh14G007140 vs. ExPASy TrEMBL
Match:
A0A6J1F5C2 (Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSL LARNSTPCT IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45
BLAST of CmaCh14G007140 vs. NCBI nr
Match:
XP_023527537.1 (uncharacterized protein LOC111790739 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASFPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 47
BLAST of CmaCh14G007140 vs. NCBI nr
Match:
XP_022935362.1 (uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935363.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935364.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935365.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935366.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata])
HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSL LARNSTPCT IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45
BLAST of CmaCh14G007140 vs. NCBI nr
Match:
KAG7017826.1 (htpX2, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSL LARNSTPCT IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASFPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45
BLAST of CmaCh14G007140 vs. NCBI nr
Match:
XP_022935367.1 (uncharacterized protein LOC111442272 isoform X2 [Cucurbita moschata])
HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSL LARNSTPCT IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45
BLAST of CmaCh14G007140 vs. NCBI nr
Match:
KAG6581096.1 (hypothetical protein SDJN03_21098, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0
Query: 1 MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
MAS PFSSL LARNSTPCT IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1 MASFPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1FAF3 | 8.6e-13 | 91.49 | Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1 | [more] |
| A0A6J1F5C2 | 8.6e-13 | 91.49 | Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_023527537.1 | 4.5e-16 | 97.87 | uncharacterized protein LOC111790739 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022935362.1 | 1.8e-12 | 91.49 | uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_0229353... | [more] |
| KAG7017826.1 | 1.8e-12 | 91.49 | htpX2, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| XP_022935367.1 | 1.8e-12 | 91.49 | uncharacterized protein LOC111442272 isoform X2 [Cucurbita moschata] | [more] |
| KAG6581096.1 | 1.8e-12 | 91.49 | hypothetical protein SDJN03_21098, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
