CmaCh14G007140.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G007140.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ste24 endopeptidase
Location	Cma_Chr14: 3608821 .. 3610034 (-)
Sequence length	244
RNA-Seq Expression	CmaCh14G007140.1
Synteny	CmaCh14G007140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCACTGAACAGCTTCCATGGCTTCCTCTCCCTTTTCTTCTCTCTGCCTCGCCAGAAATTCCACTCCTTGCACAAGTGCAATCGGATCTCGACCTTCCCACAGGTTCAATTTCACTACCTTCGGAATCGGAGCGCCGATCACTAAGAGAATTAGGTCTCCGTTTGCAGAGCTGCCTCCCTCGCCTTTCGCGACCTTGATGCCGACGATTTCCGCCATTCTCTCGATAAGCAGGTTCAAAGATTTTCTCATTTTCTTACTGAATTCATGACTACGTCGTTTCTGAGATTGATGAAACCAGTTATGTCTTAGGGCGAGGCGAGGATAGTTTCTTGTTAGCTACGGAAGCGGATTTCTTTTAGCTTTACCTCCAACTGCTATGAGAATGATTATCGATTCTTCCTAGATTATGCGCATGTTCTCTTTAATACGTGAAGATTTGTTATCTTCGAGGGCTGCAGGTTTCTCTTATTGTTGCTGAATGACGAGGAAAAAAGGACTAGAAAAATTAAGAGATCAAATAGAAGGAATTGATTGGAGAGGGAGAGTTACAGTGGGAAGGATGTAAGAAAATAGAACTCAACCAAAAAAATTTAGCTCTTCTACTTGGAGCTCTTCCTAAACCAGTCTGACTTGTTCTACTTTCGTCTGGCCAGTATAGTAAACAAAATAAGATTATGATCTGTCATCGTTTCTTATAATAATTGTGATAGAAGCGTAGCTGGCATCACATGCAGAATTCGGAGGTACATACCACGGCAGAAAATAGTATCCTAATGTAATCTAAACAAATATAATCTTTGTAATTCATTTTTTTTACGATATAGAAATTCAAGCTTGGATCTGGTGTTGTGTTACCAATTTTATAGCTTTGGAACTAGAGTGAATTGATCTTTTCAATTCATTCTTTCAGCCCGCAAGAAGTTCTCATAACCAATAGGGAGTCAGCTGTCTTTCTGGATTATGATTCAACAATTAATACATCATAATCAAGTCTCTACATCTTAAAGAAAAAACTAAATCATAGTTTAGAAGTCTAATAAAAGAATTCATACCCAATTTGAAATTAAGCTCAATGGTATACCCTCTGATGTTATGGCAATATCCTTATTTATTATTATTTTGATATTTTGATAATACTTATGTTAATATCATTCTGAGTCAGCTACCTCATTGCTTAAGTCAAGAATTTTCTTTCATGCAGAATACAATGA

mRNA sequence

AAACCACTGAACAGCTTCCATGGCTTCCTCTCCCTTTTCTTCTCTCTGCCTCGCCAGAAATTCCACTCCTTGCACAAGTGCAATCGGATCTCGACCTTCCCACAGGTTCAATTTCACTACCTTCGGAATCGGAGCGCCGATCACTAAGAGAATTAGGTCTCCGTTTGCAGAGCTGCCTCCCTCGCCTTTCGCGACCTTGATGCCGACGATTTCCGCCATTCTCTCGATAAGCAGAATACAATGA

Coding sequence (CDS)

ATGGCTTCCTCTCCCTTTTCTTCTCTCTGCCTCGCCAGAAATTCCACTCCTTGCACAAGTGCAATCGGATCTCGACCTTCCCACAGGTTCAATTTCACTACCTTCGGAATCGGAGCGCCGATCACTAAGAGAATTAGGTCTCCGTTTGCAGAGCTGCCTCCCTCGCCTTTCGCGACCTTGATGCCGACGATTTCCGCCATTCTCTCGATAAGCAGAATACAATGA

Protein sequence

MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRSPFAELPPSPFATLMPTISAILSISRIQ

Homology

[Close]

BLAST of CmaCh14G007140.1 vs. ExPASy TrEMBL
Match: A0A6J1FAF3 (Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSL LARNSTPCT  IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45

[Close]

BLAST of CmaCh14G007140.1 vs. ExPASy TrEMBL
Match: A0A6J1F5C2 (Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSL LARNSTPCT  IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45

[Close]

BLAST of CmaCh14G007140.1 vs. NCBI nr
Match: XP_023527537.1 (uncharacterized protein LOC111790739 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASFPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 47

[Close]

BLAST of CmaCh14G007140.1 vs. NCBI nr
Match: XP_022935362.1 (uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935363.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935364.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935365.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935366.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSL LARNSTPCT  IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45

[Close]

BLAST of CmaCh14G007140.1 vs. NCBI nr
Match: KAG7017826.1 (htpX2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSL LARNSTPCT  IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASFPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45

[Close]

BLAST of CmaCh14G007140.1 vs. NCBI nr
Match: XP_022935367.1 (uncharacterized protein LOC111442272 isoform X2 [Cucurbita moschata])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSL LARNSTPCT  IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASLPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45

[Close]

BLAST of CmaCh14G007140.1 vs. NCBI nr
Match: KAG6581096.1 (hypothetical protein SDJN03_21098, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASSPFSSLCLARNSTPCTSAIGSRPSHRFNFTTFGIGAPITKRIRS 48
          MAS PFSSL LARNSTPCT  IGSRPSHRFNFTTFGIGAPITKRIRS
Sbjct: 1  MASFPFSSLYLARNSTPCT--IGSRPSHRFNFTTFGIGAPITKRIRS 45

The following BLAST results are available for this feature:

BLAST of CmaCh14G007140.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G007140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FAF3	8.6e-13	91.49	Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1	[more]
A0A6J1F5C2	8.6e-13	91.49	Ste24 endopeptidase OS=Cucurbita moschata OX=3662 GN=LOC111442272 PE=3 SV=1	[more]

BLAST of CmaCh14G007140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527537.1	4.5e-16	97.87	uncharacterized protein LOC111790739 [Cucurbita pepo subsp. pepo]	[more]
XP_022935362.1	1.8e-12	91.49	uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_0229353...	[more]
KAG7017826.1	1.8e-12	91.49	htpX2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935367.1	1.8e-12	91.49	uncharacterized protein LOC111442272 isoform X2 [Cucurbita moschata]	[more]
KAG6581096.1	1.8e-12	91.49	hypothetical protein SDJN03_21098, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh14G007140.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh14G007140	CmaCh14G007140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007140.1:exon:913	CmaCh14G007140.1:exon:913	exon
CmaCh14G007140.1:exon:912	CmaCh14G007140.1:exon:912	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007140.1:cds	CmaCh14G007140.1:cds_2	CDS
CmaCh14G007140.1:cds	CmaCh14G007140.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007140.1:five_prime_utr	CmaCh14G007140.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh14G007140.1	CmaCh14G007140.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071586	CAAX-box protein processing
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity