Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTTTGTTGCTTAGTTGCAATCTAGCTCCACTTTTACTCATATTTGGTTGAAATTAAGGGATGAGGTAAATATGTTTTGTTATTCCCATGTTATGGATCCTATTTTTTTCATTGCTGGGGCTTGGTGCATTGAATTGCATGTGTCTAATCAAAGTCCTCTTTGGTTGGTGAACTTCTATTGTTCATCATGGGTGTTTGGACAAATTTTTTTAACTTTGAATCATGCCATTATGTGAATTACTTCCTACAATTTGTCCTAAACCTTCTGTAGCTTGTTGGCTTTGTGGGGAATTGAGAAAAAAGTCTTGGGGAATTCCACATGTTGCAGGTTTGATCCTTTTCGGTAGAGAGAAGGAAACCAGAAACAAAATTATTTCCTACAATTTGGCTGACAAAACCCCCCTGTTTTGGACTGAGTTAGAGCATTTCTGGCTTGTTCAAAAGCAACATTTGGTTACTTTCTTTCTTTCCCTCTCTCTCTCTCTCTCAAGGGAGAAACAGGAACTTTGAATTTTTCTCCTAAATCTTAAGTAGTGAACATTTGAATTTACTTTAGCACTGTATCTCCTTCTATTAGGGTGACTGGTGAAGATTGTACATTGCTTTTCTCCTTTCTCTTGAATCTCTAGATCTTGTTTATAAAATGGTGAAGATTGTACGGACGGTCAAGAAAGTTAGTGACCTGATGACAGGGGAGCTAGCGATCAAAGTCCCAGTGAATGGCGACTCTAACTATAACGGTCCTAAGGTAGCGAAATTCTTTGTCAGGTAAGTTCCAACCCGCACGCAAGGTATAACGGTCTGGGCATCGTCTCAGAGAGGAGCTCAATGAAATTGACATGTTTGTGAAGATGCAGACTACTTGCACCTGGACATAAAGACCCTGAAAAGCTTCACTGTTTCTTGAGATTGAAAAAAAACCGAGTCACGGTCGTAGTTTTTCAAAAGTTTTGTGTGGAATGATTAGGCTTTATGATTTAGAATAGGATTTCGAAGAAGCGGTGTGCATAAAACAGTAAAAGAGCTCTTCAAATCGAACCCTACTTCGGAAACACAAATCTGGGATGTTTAAAGTACGTGCTAAAAAACCGAGTCACGGTCGTAGTTTTTCAAAAGTTTTGGGTGGAATGATTAGGCTTTATGATTTAGAATAGGATTTCGAAGAAACGGTGTGCATAAAACAGTAAAAGAGTTCTTCAAATCGAACCCTACTTCGGAAACCCAAATCTGAAACGTTTGAAGTACGTGCTAAAAAAATCGAGTCACGGTCGTAGTTTTTCAAAAGTTTTGGGTGGAATGATTATATGATTGAGCCATATACTCTTAACCAAGGTATTAAAGATTTGAAAGAGATATTTGTATGTTTTTCTTCTTGTTTAACTTTTTAGAGTGGGTTCTACTTAGCACATAGAGTTTAGAACTAGTTTAAACTCTTAAACTAGTCATGAATAATACCCGATTATTATTGTTGATTAAAGTAGTCTTGATTTGCGTCTATTATTATGCCTAACTTTATTAAATAGTGTCCTTCCATTTGAAAATTGAAGTGGAGCACCATGGCATGCTTTTTAAATGTTTTAGGTCACCCCTTGCTTTCAACTTTTGTGGCTGTATGTCTCTTCCATGCACGACATAGCCCGTAACATCTGGCCTTTTTAATGCTCGGCTTCATTTTCTCCCTTCAAAGGACTTCGCTTCTTTTTCATTTTACTTTTACATTCTGAAGTGAGATACAGTCTTAGGTAGATGTAGATTCTCATGATGTAATAGTGTCTGTATTTGTTGGGTTTAAAAATGAATTTGAGTTTCATTTCTCTGTCATGTCGCATTAATTCATCTGGGCCATGCAATTGCAGAGGGTAAAGAACAAGTGGAGGCTTGGAGACCAAGAATTCCCCACAAGATACGACACAAAGGTTGGTCTATACATCTTCTTGGTTTCATGTGCCTCTTGATTGCTTAATATAGGACATGTCCATGATGATCTTTTTACCTGTAACTATCATCATTTCAGGTACCATTTAGTTTTTAGTTTATAACCTTTAAGCCAAGGACAGTTTTCAGGTCTCATTCAATGACCATTTTACTTTAAATTTTGGATTTTAGAAGATGAAGCTTATAAATCCTATTTCTATTCATGAATTCCTTGTTTCGATATTTACTTTTCTTACCTAACGTAAGTCAAATTTTAAAGAACTCGTTTTCGAAAACTTATTTGGTTGAAGTTTGATTAAGAATTCAAATGATCAGAAACAAATAAAGTTTTCACAAACAAAATAAAAACTAAATAAGTAATAATGAGATTACTTTTTATTTTATTTTATTATTCTTAACACTGAGAAATGATCTTTTGTTCTTTATTTTTTTGAAAAAAAAATCTTCAATGATTTAGTACAAAGTTTTTAAAAAATTTAAGTGGGTCTTTCCACTTTTTTTACCTTTTAGTTGATAATACATATCATTACCTTTCTAGTTCATAGTTTATTTTGTTTTGTTTCTGATAGAAATCCATATGTCTAA
mRNA sequence
ATGATGTTGCAATCTAGCTCCACTTTTACTCATATTTGGTTGAAATTAAGGGATGAGATTGTACGGACGGTCAAGAAAGTTAGTGACCTGATGACAGGGGAGCTAGCGATCAAAGTCCCAGTGAATGGCGACTCTAACTATAACGGTCCTAAGGTAGCGAAATTCTTTGTCAGAAATCCATATGTCTAA
Coding sequence (CDS)
ATGATGTTGCAATCTAGCTCCACTTTTACTCATATTTGGTTGAAATTAAGGGATGAGATTGTACGGACGGTCAAGAAAGTTAGTGACCTGATGACAGGGGAGCTAGCGATCAAAGTCCCAGTGAATGGCGACTCTAACTATAACGGTCCTAAGGTAGCGAAATTCTTTGTCAGAAATCCATATGTCTAA
Protein sequence
MMLQSSSTFTHIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPYV
Homology
BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match:
A0A2K3LCH5 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g032188 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0
Query: 12 IWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVR 59
+W +L + VKKV DLMTG+LA + PVNG NYNGPKVAKF V+
Sbjct: 9 VW-RLTPAQCQKVKKVGDLMTGKLATEAPVNGGRNYNGPKVAKFLVK 54
BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match:
A0A3P6E4I6 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45651Z PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 0
Query: 11 HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
H+W L R VK+V DLMTGE A + PVNG NYNGPKVAKF V PY
Sbjct: 62 HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLV-GPY 110
BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match:
A0A5N6MLP8 (Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0
Query: 11 HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
H+W L R VK+V DLMTGE A + PVNG NYNGPK+AKF V PY
Sbjct: 440 HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKIAKFLV-GPY 488
BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match:
A0A7J9AHP9 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_004117 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0
Query: 21 VRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFV 58
V VK+V DLMTGE AI+ P+NGD NYNGPKVAKF +
Sbjct: 115 VLKVKEVGDLMTGEPAIEAPLNGDRNYNGPKVAKFLI 151
BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match:
A0A2N9GIA5 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 0
Query: 22 RTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNP 61
R VK+V DLMTGE A + PVNG NYNGPKVAKF V P
Sbjct: 1122 RKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLVGPP 1160
BLAST of CmaCh06G003250 vs. NCBI nr
Match:
VDD26359.1 (unnamed protein product [Brassica rapa])
HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 0
Query: 11 HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
H+W L R VK+V DLMTGE A + PVNG NYNGPKVAKF V PY
Sbjct: 62 HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLV-GPY 110
BLAST of CmaCh06G003250 vs. NCBI nr
Match:
PNX76243.1 (hypothetical protein L195_g032188, partial [Trifolium pratense])
HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0
Query: 12 IWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVR 59
+W +L + VKKV DLMTG+LA + PVNG NYNGPKVAKF V+
Sbjct: 9 VW-RLTPAQCQKVKKVGDLMTGKLATEAPVNGGRNYNGPKVAKFLVK 54
BLAST of CmaCh06G003250 vs. NCBI nr
Match:
KAD3640919.1 (hypothetical protein E3N88_30142 [Mikania micrantha])
HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0
Query: 11 HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
H+W L R VK+V DLMTGE A + PVNG NYNGPK+AKF V PY
Sbjct: 440 HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKIAKFLV-GPY 488
BLAST of CmaCh06G003250 vs. NCBI nr
Match:
MBA0723545.1 (hypothetical protein [Gossypium laxum])
HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0
Query: 21 VRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFV 58
V VK+V DLMTGE AI+ P+NGD NYNGPKVAKF +
Sbjct: 115 VLKVKEVGDLMTGEPAIEAPLNGDRNYNGPKVAKFLI 151
BLAST of CmaCh06G003250 vs. NCBI nr
Match:
VDD65689.1 (unnamed protein product [Brassica oleracea])
HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 0
Query: 22 RTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
R VK+V DLMTGE A + PVNG NYNGPKVAKF V PY
Sbjct: 96 RKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLV-GPY 134
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A2K3LCH5 | 1.9e-05 | 59.57 | Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g03218... | [more] |
| A0A3P6E4I6 | 1.9e-05 | 60.78 | Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45651Z PE=4 S... | [more] |
| A0A5N6MLP8 | 2.5e-05 | 58.82 | Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3... | [more] |
| A0A7J9AHP9 | 2.5e-05 | 70.27 | Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_004117 PE=4 SV=1 | [more] |
| A0A2N9GIA5 | 4.2e-05 | 69.23 | Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| VDD26359.1 | 3.9e-05 | 60.78 | unnamed protein product [Brassica rapa] | [more] |
| PNX76243.1 | 3.9e-05 | 59.57 | hypothetical protein L195_g032188, partial [Trifolium pratense] | [more] |
| KAD3640919.1 | 5.1e-05 | 58.82 | hypothetical protein E3N88_30142 [Mikania micrantha] | [more] |
| MBA0723545.1 | 5.1e-05 | 70.27 | hypothetical protein [Gossypium laxum] | [more] |
| VDD65689.1 | 1.1e-04 | 70.00 | unnamed protein product [Brassica oleracea] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
