CmaCh06G003250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G003250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	BnaC09g30100D protein
Location	Cma_Chr06: 1528212 .. 1530737 (+)
RNA-Seq Expression	CmaCh06G003250
Synteny	CmaCh06G003250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTTTTGTTGCTTAGTTGCAATCTAGCTCCACTTTTACTCATATTTGGTTGAAATTAAGGGATGAGGTAAATATGTTTTGTTATTCCCATGTTATGGATCCTATTTTTTTCATTGCTGGGGCTTGGTGCATTGAATTGCATGTGTCTAATCAAAGTCCTCTTTGGTTGGTGAACTTCTATTGTTCATCATGGGTGTTTGGACAAATTTTTTTAACTTTGAATCATGCCATTATGTGAATTACTTCCTACAATTTGTCCTAAACCTTCTGTAGCTTGTTGGCTTTGTGGGGAATTGAGAAAAAAGTCTTGGGGAATTCCACATGTTGCAGGTTTGATCCTTTTCGGTAGAGAGAAGGAAACCAGAAACAAAATTATTTCCTACAATTTGGCTGACAAAACCCCCCTGTTTTGGACTGAGTTAGAGCATTTCTGGCTTGTTCAAAAGCAACATTTGGTTACTTTCTTTCTTTCCCTCTCTCTCTCTCTCTCAAGGGAGAAACAGGAACTTTGAATTTTTCTCCTAAATCTTAAGTAGTGAACATTTGAATTTACTTTAGCACTGTATCTCCTTCTATTAGGGTGACTGGTGAAGATTGTACATTGCTTTTCTCCTTTCTCTTGAATCTCTAGATCTTGTTTATAAAATGGTGAAGATTGTACGGACGGTCAAGAAAGTTAGTGACCTGATGACAGGGGAGCTAGCGATCAAAGTCCCAGTGAATGGCGACTCTAACTATAACGGTCCTAAGGTAGCGAAATTCTTTGTCAGGTAAGTTCCAACCCGCACGCAAGGTATAACGGTCTGGGCATCGTCTCAGAGAGGAGCTCAATGAAATTGACATGTTTGTGAAGATGCAGACTACTTGCACCTGGACATAAAGACCCTGAAAAGCTTCACTGTTTCTTGAGATTGAAAAAAAACCGAGTCACGGTCGTAGTTTTTCAAAAGTTTTGTGTGGAATGATTAGGCTTTATGATTTAGAATAGGATTTCGAAGAAGCGGTGTGCATAAAACAGTAAAAGAGCTCTTCAAATCGAACCCTACTTCGGAAACACAAATCTGGGATGTTTAAAGTACGTGCTAAAAAACCGAGTCACGGTCGTAGTTTTTCAAAAGTTTTGGGTGGAATGATTAGGCTTTATGATTTAGAATAGGATTTCGAAGAAACGGTGTGCATAAAACAGTAAAAGAGTTCTTCAAATCGAACCCTACTTCGGAAACCCAAATCTGAAACGTTTGAAGTACGTGCTAAAAAAATCGAGTCACGGTCGTAGTTTTTCAAAAGTTTTGGGTGGAATGATTATATGATTGAGCCATATACTCTTAACCAAGGTATTAAAGATTTGAAAGAGATATTTGTATGTTTTTCTTCTTGTTTAACTTTTTAGAGTGGGTTCTACTTAGCACATAGAGTTTAGAACTAGTTTAAACTCTTAAACTAGTCATGAATAATACCCGATTATTATTGTTGATTAAAGTAGTCTTGATTTGCGTCTATTATTATGCCTAACTTTATTAAATAGTGTCCTTCCATTTGAAAATTGAAGTGGAGCACCATGGCATGCTTTTTAAATGTTTTAGGTCACCCCTTGCTTTCAACTTTTGTGGCTGTATGTCTCTTCCATGCACGACATAGCCCGTAACATCTGGCCTTTTTAATGCTCGGCTTCATTTTCTCCCTTCAAAGGACTTCGCTTCTTTTTCATTTTACTTTTACATTCTGAAGTGAGATACAGTCTTAGGTAGATGTAGATTCTCATGATGTAATAGTGTCTGTATTTGTTGGGTTTAAAAATGAATTTGAGTTTCATTTCTCTGTCATGTCGCATTAATTCATCTGGGCCATGCAATTGCAGAGGGTAAAGAACAAGTGGAGGCTTGGAGACCAAGAATTCCCCACAAGATACGACACAAAGGTTGGTCTATACATCTTCTTGGTTTCATGTGCCTCTTGATTGCTTAATATAGGACATGTCCATGATGATCTTTTTACCTGTAACTATCATCATTTCAGGTACCATTTAGTTTTTAGTTTATAACCTTTAAGCCAAGGACAGTTTTCAGGTCTCATTCAATGACCATTTTACTTTAAATTTTGGATTTTAGAAGATGAAGCTTATAAATCCTATTTCTATTCATGAATTCCTTGTTTCGATATTTACTTTTCTTACCTAACGTAAGTCAAATTTTAAAGAACTCGTTTTCGAAAACTTATTTGGTTGAAGTTTGATTAAGAATTCAAATGATCAGAAACAAATAAAGTTTTCACAAACAAAATAAAAACTAAATAAGTAATAATGAGATTACTTTTTATTTTATTTTATTATTCTTAACACTGAGAAATGATCTTTTGTTCTTTATTTTTTTGAAAAAAAAATCTTCAATGATTTAGTACAAAGTTTTTAAAAAATTTAAGTGGGTCTTTCCACTTTTTTTACCTTTTAGTTGATAATACATATCATTACCTTTCTAGTTCATAGTTTATTTTGTTTTGTTTCTGATAGAAATCCATATGTCTAA

mRNA sequence

ATGATGTTGCAATCTAGCTCCACTTTTACTCATATTTGGTTGAAATTAAGGGATGAGATTGTACGGACGGTCAAGAAAGTTAGTGACCTGATGACAGGGGAGCTAGCGATCAAAGTCCCAGTGAATGGCGACTCTAACTATAACGGTCCTAAGGTAGCGAAATTCTTTGTCAGAAATCCATATGTCTAA

Coding sequence (CDS)

ATGATGTTGCAATCTAGCTCCACTTTTACTCATATTTGGTTGAAATTAAGGGATGAGATTGTACGGACGGTCAAGAAAGTTAGTGACCTGATGACAGGGGAGCTAGCGATCAAAGTCCCAGTGAATGGCGACTCTAACTATAACGGTCCTAAGGTAGCGAAATTCTTTGTCAGAAATCCATATGTCTAA

Protein sequence

MMLQSSSTFTHIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPYV

Homology

[Close]

BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match: A0A2K3LCH5 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g032188 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 12 IWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVR 59
          +W +L     + VKKV DLMTG+LA + PVNG  NYNGPKVAKF V+
Sbjct: 9  VW-RLTPAQCQKVKKVGDLMTGKLATEAPVNGGRNYNGPKVAKFLVK 54

[Close]

BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match: A0A3P6E4I6 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45651Z PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.9e-05
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
           H+W  L     R VK+V DLMTGE A + PVNG  NYNGPKVAKF V  PY
Sbjct: 62  HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLV-GPY 110

[Close]

BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match: A0A5N6MLP8 (Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
           H+W  L     R VK+V DLMTGE A + PVNG  NYNGPK+AKF V  PY
Sbjct: 440 HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKIAKFLV-GPY 488

[Close]

BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match: A0A7J9AHP9 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_004117 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 21  VRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFV 58
           V  VK+V DLMTGE AI+ P+NGD NYNGPKVAKF +
Sbjct: 115 VLKVKEVGDLMTGEPAIEAPLNGDRNYNGPKVAKFLI 151

[Close]

BLAST of CmaCh06G003250 vs. ExPASy TrEMBL
Match: A0A2N9GIA5 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 22   RTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNP 61
            R VK+V DLMTGE A + PVNG  NYNGPKVAKF V  P
Sbjct: 1122 RKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLVGPP 1160

[Close]

BLAST of CmaCh06G003250 vs. NCBI nr
Match: VDD26359.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 31/51 (60.78%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
           H+W  L     R VK+V DLMTGE A + PVNG  NYNGPKVAKF V  PY
Sbjct: 62  HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLV-GPY 110

[Close]

BLAST of CmaCh06G003250 vs. NCBI nr
Match: PNX76243.1 (hypothetical protein L195_g032188, partial [Trifolium pratense])

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 12 IWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVR 59
          +W +L     + VKKV DLMTG+LA + PVNG  NYNGPKVAKF V+
Sbjct: 9  VW-RLTPAQCQKVKKVGDLMTGKLATEAPVNGGRNYNGPKVAKFLVK 54

[Close]

BLAST of CmaCh06G003250 vs. NCBI nr
Match: KAD3640919.1 (hypothetical protein E3N88_30142 [Mikania micrantha])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 30/51 (58.82%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 11  HIWLKLRDEIVRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
           H+W  L     R VK+V DLMTGE A + PVNG  NYNGPK+AKF V  PY
Sbjct: 440 HVW-GLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKIAKFLV-GPY 488

[Close]

BLAST of CmaCh06G003250 vs. NCBI nr
Match: MBA0723545.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 21  VRTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFV 58
           V  VK+V DLMTGE AI+ P+NGD NYNGPKVAKF +
Sbjct: 115 VLKVKEVGDLMTGEPAIEAPLNGDRNYNGPKVAKFLI 151

[Close]

BLAST of CmaCh06G003250 vs. NCBI nr
Match: VDD65689.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 22  RTVKKVSDLMTGELAIKVPVNGDSNYNGPKVAKFFVRNPY 62
           R VK+V DLMTGE A + PVNG  NYNGPKVAKF V  PY
Sbjct: 96  RKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLV-GPY 134

The following BLAST results are available for this feature:

BLAST of CmaCh06G003250 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3LCH5	1.9e-05	59.57	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g03218...	[more]
A0A3P6E4I6	1.9e-05	60.78	Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC143T45651Z PE=4 S...	[more]
A0A5N6MLP8	2.5e-05	58.82	Uncharacterized protein ycf68 OS=Mikania micrantha OX=192012 GN=E3N88_30142 PE=3...	[more]
A0A7J9AHP9	2.5e-05	70.27	Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_004117 PE=4 SV=1	[more]
A0A2N9GIA5	4.2e-05	69.23	Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3...	[more]

BLAST of CmaCh06G003250 vs. NCBI nr


Match Name	E-value	Identity	Description
VDD26359.1	3.9e-05	60.78	unnamed protein product [Brassica rapa]	[more]
PNX76243.1	3.9e-05	59.57	hypothetical protein L195_g032188, partial [Trifolium pratense]	[more]
KAD3640919.1	5.1e-05	58.82	hypothetical protein E3N88_30142 [Mikania micrantha]	[more]
MBA0723545.1	5.1e-05	70.27	hypothetical protein [Gossypium laxum]	[more]
VDD65689.1	1.1e-04	70.00	unnamed protein product [Brassica oleracea]	[more]

BLAST of CmaCh06G003250 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G003250.1	CmaCh06G003250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity