CmaCh06G002780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G002780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Legume-specific protein
Location	Cma_Chr06: 1359465 .. 1359740 (-)
RNA-Seq Expression	CmaCh06G002780
Synteny	CmaCh06G002780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCCTAATTCCCTTCGTTTACAGAGCGATTGTTCATTACAAGAACGACAAACAAGTCCCGCCGATCCGATCTTGGCTTAGCGATTCGCCGTCGGCGTCGTATATCAGACTTCCGAGCGGCGATTCCGGCCGATTCCTTTTCCAATCAGAGGGTTCATATACGGCCACCTCACCTTCGAAATCCGCCTCTTCCACTGCCACCCAGATTCTCGTTGCTACCGGAGTTCAGTCGCCGCTCCGCCCGCTGGCCCCTCGTCGAGTCGCCGCCTGA

mRNA sequence

ATGGAAGGCCTAATTCCCTTCGTTTACAGAGCGATTGTTCATTACAAGAACGACAAACAAGTCCCGCCGATCCGATCTTGGCTTAGCGATTCGCCGTCGGCGTCGTATATCAGACTTCCGAGCGGCGATTCCGGCCGATTCCTTTTCCAATCAGAGGGTTCATATACGGCCACCTCACCTTCGAAATCCGCCTCTTCCACTGCCACCCAGATTCTCGTTGCTACCGGAGTTCAGTCGCCGCTCCGCCCGCTGGCCCCTCGTCGAGTCGCCGCCTGA

Coding sequence (CDS)

ATGGAAGGCCTAATTCCCTTCGTTTACAGAGCGATTGTTCATTACAAGAACGACAAACAAGTCCCGCCGATCCGATCTTGGCTTAGCGATTCGCCGTCGGCGTCGTATATCAGACTTCCGAGCGGCGATTCCGGCCGATTCCTTTTCCAATCAGAGGGTTCATATACGGCCACCTCACCTTCGAAATCCGCCTCTTCCACTGCCACCCAGATTCTCGTTGCTACCGGAGTTCAGTCGCCGCTCCGCCCGCTGGCCCCTCGTCGAGTCGCCGCCTGA

Protein sequence

MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSPSKSASSTATQILVATGVQSPLRPLAPRRVAA

Homology

[Close]

BLAST of CmaCh06G002780 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF FQS+ S ++ SP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
            ++S+TATQILV+TGVQSPLR L  RRVAA
Sbjct: 61 --TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of CmaCh06G002780 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF FQS+ S ++ SP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
          +   SST TQILV+TGVQSPLR L  RRVAA
Sbjct: 61 T---SSTTTQILVSTGVQSPLRHLTTRRVAA 88

[Close]

BLAST of CmaCh06G002780 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQS-EGSYTATS 60
          MEGLIPFVY+AI+ YK DK   PI SWL +SPS SY+RLP+GDSGRF  Q+   S++A S
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSKS--ASSTATQILVATGVQSPLRPLAPRRVAA 92
          PS +   SS+ATQI+V++GVQSP + L  RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of CmaCh06G002780 vs. ExPASy TrEMBL
Match: A0A6J1AT90 (uncharacterized protein LOC110420657 OS=Herrania umbratica OX=108875 GN=LOC110420657 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.9e-18
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRF------LFQSE-G 60
          MEGLIPFVYRAIV YKN ++   + +W S+SPSASY+RLP+GDSGRF      +FQS+ G
Sbjct: 1  MEGLIPFVYRAIVQYKNGRE-GVLATWFSESPSASYMRLPTGDSGRFQVSDKQVFQSDYG 60

Query: 61 SYTATSPSKSASSTATQILVATGVQSPLRPLAPRRVAA 92
           ++A+SPS  A+S+ T+I+++TGVQSP+  L  RRV A
Sbjct: 61 DFSASSPSSMATSSTTKIILSTGVQSPVCRLTSRRVVA 97

[Close]

BLAST of CmaCh06G002780 vs. ExPASy TrEMBL
Match: A0A061EYS9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021870 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRF------LFQSE-G 60
          MEGLIPFVYRAIV +KN ++   + +W S+SPSASY+RLP+GDSGRF      +FQS+ G
Sbjct: 1  MEGLIPFVYRAIVQHKNGRE-GVLATWFSESPSASYMRLPTGDSGRFQVSDKQVFQSDYG 60

Query: 61 SYTATSPSKSASSTATQILVATGVQSPLRPLAPRRVAA 92
           ++A+SPS  A+S+ TQI+++TGVQSP+  L  RRV A
Sbjct: 61 DFSASSPSSMAASSTTQIILSTGVQSPVCRLTSRRVVA 97

[Close]

BLAST of CmaCh06G002780 vs. NCBI nr
Match: KAG6596392.1 (hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.3 bits (425), Expect = 3.0e-38
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEGLIPFVYRAIVHYKNDKQVPPIRSWL+DSPSASYIRLPSGDSGRFLFQS+GSYTATSP
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSDGSYTATSP 60

Query: 61 SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
          SKS SSTATQILVATGVQSPLR LAP RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of CmaCh06G002780 vs. NCBI nr
Match: KAG7027938.1 (hypothetical protein SDJN02_09117, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 8.8e-38
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEGLIPFVYRAIVHYKNDKQVPPIRSWL+DSPSASYIRLPSGDSGRFLFQS GSYTATSP
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSGGSYTATSP 60

Query: 61 SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
          SKS SSTATQILVATGVQSPLR LAP RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of CmaCh06G002780 vs. NCBI nr
Match: KAG7017269.1 (hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.0 bits (336), Expect = 6.3e-28
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEG+IPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF    +GSY+A SP
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRF---QDGSYSAASP 60

Query: 61 -SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
           SKSASST TQIL++TGVQSPLR L PRRVAA
Sbjct: 61 SSKSASSTTTQILISTGVQSPLRHLTPRRVAA 89

[Close]

BLAST of CmaCh06G002780 vs. NCBI nr
Match: KAG6580521.1 (hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 71/92 (77.17%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEG+IPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF    +GSY+A SP
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRF---QDGSYSAASP 60

Query: 61 -SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
           SKSASST TQIL++TGVQSPLR L PRRV A
Sbjct: 61 SSKSASSTTTQILISTGVQSPLRHLTPRRVVA 89

[Close]

BLAST of CmaCh06G002780 vs. NCBI nr
Match: KAA0044116.1 (legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLSDSPSASYIRLPSGDSGRFLFQSEGSYTATSP 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPS SYIRLPSGDSGRF FQS+ S ++ SP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 SKSASSTATQILVATGVQSPLRPLAPRRVAA 92
            ++S+TATQILV+TGVQSPLR L  RRVAA
Sbjct: 61 --TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

The following BLAST results are available for this feature:

BLAST of CmaCh06G002780 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G002780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNC7	7.6e-27	75.82	Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD26	1.3e-26	75.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1	[more]
K7MT87	1.3e-18	60.64	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1	[more]
A0A6J1AT90	4.9e-18	57.14	uncharacterized protein LOC110420657 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]
A0A061EYS9	6.4e-18	57.14	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021870 PE=4 SV=1	[more]

BLAST of CmaCh06G002780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596392.1	3.0e-38	94.51	hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027938.1	8.8e-38	94.51	hypothetical protein SDJN02_09117, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7017269.1	6.3e-28	78.26	hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580521.1	1.8e-27	77.17	hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044116.1	1.6e-26	75.82	legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific p...	[more]

BLAST of CmaCh06G002780 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR34670:SF10	LEGUME-SPECIFIC PROTEIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G002780.1	CmaCh06G002780.1	mRNA