Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGGTTTGTTGGACAAATAGTGGAATGGTTTGGTTTCTCCATTTTCTGATCCAATCTAAACTACTTCCTGCAACTCGAGAGGTACATCACCTAATCCCATTAGACAATGGATCATAAAACTTTATCTTCTAGTCGTGAATTTTCCATGTAGCATGCGATACATAGGGGTTTAAAAGTTGTTTATTCATCTTTACCATGATCTCAATGTGAATTCTCAATATTGTTTATAACTTATACATGGGTTAGACTATCTACTTTAATGTAACTTATTTGTTTGTTCACTTCTGTGACTATGAGTGATCCGTTCTCACGTCTTTCCAAGCTTTATGCAATTGATTAAGTTTCTATATAGAAAGCCCACAATTATGAGTCATCACATTTGGGGACTTTTATGATGTATTGGACTCTATCATTGGATCAAGCCGTGGGTGCTGATGCTCGTCTTCACTACCATAATTTCTGCAGGTAAAGCAAACAAACTAGTTGGATATGTATTGAGTATTTATTTGACTTGTCTTCTAAATATTAGGAAGTTATTTACTATCTATACTTTAGTTGAATATTCAACCTATGCATATTATGTTGATGATTATTGAGAGAGAGAGTAGTCTCACGTGGGTTAATTAAGAGGAAGATCATGGGTTTATAAGTAAGGAATAGTATCTCCATTGATATGAGGCATTTTGGGAAAATCCAAAGCAAAACCATGAGAGTTTATGCTCAAAGTGGATAATATCCTACTATTGTGGAGGTTTGTGATTCCTAACATATTATACAAAAAAAAAAAAAAACATACAACTTGGATAATTATTGGATACGTATTGAATATTCTGAATAGTATTATACATACATTAAAAATAATACATTAATACATTTCGAGAGTAGGATAAATCTAAGTCATTTTTAGTTTTTTTTTCCAAAAAGGTTTAAGTCGTGTGTGCTTTTGCTGGCCTACATGGGTCGGGTCGGGTGGTTGTAGTTGACAACCATAGCTACCATATTATGAAGGCCTTTCTTCCAAAGAAATGAGTATAACCAAATCCTAATGGAACTTTAAATTATTGTTATAATTGTTTTGAATGGAAGGACAGATGTGTGGCTGGGGGCTGTTCATTGAATAAAGTCCACAGTTTTGTCTTAAGCTTTAGACTCAAAAGTGGATTCTTCTTGATTTAGGCCTGTGCTTTGATTCATTAAATGTTTGGTTTTGAATGCTTGGCTTGTATTTTGCCACATTACTTTGCCACTTATTGTCTTTATTCTTGTGATATTGGTTGGCCGACTTGTCGGTTAAAATGCTCTGGGGACCAGTTTTTGTTCTTTATTACTCTTTGCTAATAAGCACAATATGTGAGATAACTCCTTGTTACTCTAAATTATTGGTTGAGTTGAGAAGTGTCAGTAATCAGCTAGAAGTTTTTACTAGATGGTGATGCTTTGCTAGTTGAACTTGGTCGAAATATTAGTTCCTATTCGATAGGGTTAATTGTGTCATCTGGTTCTTGCACGGTACACCATATTGCATAATGTTTGAATTGGGTTTAGGCTAACGTGTTGTATCGTGGTCGGTCAAGGATAATACATGTTTCAAAGGAAAAAAATTATATGGTATTACTATTGAGTGTTTGCATAATGTTTGAACTGTGTTTAGGCTGACGTCTTGTGTTGTAGTCGATCGAGGATGTACATGTTACGAAGCGGAGAAATACTCTACGGTATCACTATGGAGTGTTTAAACGAGGTATCGTTGGCTTGGTTATTATTGTATATGGATTTGACTGAACTTTATAGATAAATTACTCACTCAACCATATTATTGAGAGATGGAAATCTTTTAATACTAGATTTGCATAATATTTACTATTTACCCATTTAAACAATGGCAAAAAGAAGGGCCTTGAATAAAATTAGTTGGTTGGGTTTACATGGGTGTATGTTAAAAATGGTTAGACGAACACGACTCTCCACAATGGTATGATTCCATTCAACACCTTCTCCCTCGAACAAACTATGCCTCTCCTTAATCGAGGCTCGTCTCCCTTTTCTTTTGAAGGCATATGTTTGACATTTGAGGATTCTATTGACCTAGTTAAATTTAGGGCATGACTTTGATACCATGTTACACGAACACGACTCTCCACAATGGTATGATATAAAGATTTCATGTTAATGGAGAGAGTATTCTTTGATTATAAATTCATGATCATTTCCTAAATCCGATGTGGAACTTTCCTTCAACAATTATAAATTTATAAACTAATTTTAAACTAAAATGATTAGAGAAATTTTAAAATCAAAAGTGTCATAGTTCATGTTGGGTTGGTAGGGCCAAGTGATTCGGGAGATTTGATTAAAGTTTATGGTCCCAAATTTCAAAGAGGGAGACTGAAAAGTCAATAGGTAAAACAAATGGGACAGAAATTGCTATGTGAATTGCTTGACAACGTCCATCACATATTATTGTATAGACCCTTTCAAAGTCGGTCATTTTTTTACTTCTTTTTCCAATTTTTCTTTACAAATATCTCTGACTATTGCATTCAAAGTTCATAAATATAATCTGAAAAAAAATGTATTATTTGTTGTTTTTAATTGATTTTTTGGGTGACAAGTTCAATCATAATTGTGTGTATGTTGCTTAGAATTTTCTTGCAGAAGTCTAATCACATTCATACAAATATTAGGTTTTTCGCGAACAGTTTGAACCTCTAATCCTGGATAAGTTAGTTTAGATATTAATAAGTTGTTATAAAATAGTTTTTCTAATGTTCTGTTCGTGACTATGATTTAGAATTTAGATTTTGTGTTCAATAGCTTCTATGTTCTTTTGTGGCATGACTATGTTACTTGATTCAAATTGTTTCTAAGGGCAGAAACTATTGAGTCGTTTTACATATGTTTTCCTCAGGAGGTCACTTAACATAAAATTGTTTCTAGCTTCATTACAATGGTTACATGAGTGAGTCGCATGAGAATAAGGTACACTTTATTGTGGTTCTTTTAAATTTATTTATAATTTTATATTTTTTAAGATCATTTTTATTTAAATATGATATGATTTCTTTATTGGGTGAGATGTAGGAAATTTTCGTGTTATTCTTATTTAAATCGCATTTACCCTTTGTTTAATACAAAAATGTCTCAAGATCTTGTAAGGTGGGAATATTTGTTTGTTTGATCTTATACATCACAAAAATTATATATTTATGAATTATTCTTTTTTATCAGACTATGA
mRNA sequence
ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGACTATGA
Coding sequence (CDS)
ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGACTATGA
Protein sequence
MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTSRL
Homology
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match:
A0A6J1FLE1 (uncharacterized protein LOC111446814 OS=Cucurbita moschata OX=3662 GN=LOC111446814 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 228 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 287
Query: 61 R 62
R
Sbjct: 288 R 288
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match:
A0A5A7UFG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00660 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
+AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 145 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 204
Query: 61 RL 63
R+
Sbjct: 205 RV 206
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match:
A0A1S3B9G5 (uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
+AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 227 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 286
Query: 61 RL 63
R+
Sbjct: 287 RV 288
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match:
A0A6J1IHW7 (uncharacterized protein LOC111477072 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477072 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
+AL+FVVSISLKSV EFFT IKNKPALDAV+LLSFNWF+LGI AYP LPN+ARLL PL S
Sbjct: 256 VALMFVVSISLKSVVEFFTTIKNKPALDAVSLLSFNWFVLGILAYPTLPNMARLLAPLAS 315
Query: 61 RL 63
R+
Sbjct: 316 RV 317
BLAST of CmaCh01G013490 vs. ExPASy TrEMBL
Match:
A0A6J1F6D4 (uncharacterized protein LOC111442593 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442593 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
+AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPN+AR+L PL S
Sbjct: 256 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNMARVLAPLAS 315
Query: 61 RL 63
R+
Sbjct: 316 RV 317
BLAST of CmaCh01G013490 vs. NCBI nr
Match:
KAG6608015.1 (hypothetical protein SDJN03_01357, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 293 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 352
Query: 61 R 62
R
Sbjct: 353 R 353
BLAST of CmaCh01G013490 vs. NCBI nr
Match:
XP_022941541.1 (uncharacterized protein LOC111446814 [Cucurbita moschata])
HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 228 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 287
Query: 61 R 62
R
Sbjct: 288 R 288
BLAST of CmaCh01G013490 vs. NCBI nr
Match:
XP_023523435.1 (uncharacterized protein LOC111787648, partial [Cucurbita pepo subsp. pepo])
HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 147 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 206
Query: 61 R 62
R
Sbjct: 207 R 207
BLAST of CmaCh01G013490 vs. NCBI nr
Match:
XP_008444253.1 (PREDICTED: uncharacterized protein LOC103487633 [Cucumis melo])
HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
+AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 227 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 286
Query: 61 RL 63
R+
Sbjct: 287 RV 288
BLAST of CmaCh01G013490 vs. NCBI nr
Match:
KAG6591853.1 (hypothetical protein SDJN03_14199, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0
Query: 1 MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
+AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP+LPN+AR+L PL S
Sbjct: 263 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPILPNMARVLAPLAS 322
Query: 61 RL 63
R+
Sbjct: 323 RV 324
BLAST of CmaCh01G013490 vs. TAIR 10
Match:
AT5G45310.1 (unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 77.4 bits (189), Expect = 4.5e-15
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0
Query: 2 ALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVP 58
AL VV ISLKSV +FF+ +KNKPALDAVAL+S NWFI+G YP LP +AR++VP
Sbjct: 268 ALFTVVGISLKSVVQFFSTVKNKPALDAVALMSLNWFIVGTLTYPTLPRVARIVVP 323
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1FLE1 | 3.2e-21 | 95.08 | uncharacterized protein LOC111446814 OS=Cucurbita moschata OX=3662 GN=LOC1114468... | [more] |
| A0A5A7UFG8 | 3.3e-18 | 82.26 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3B9G5 | 3.3e-18 | 82.26 | uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=... | [more] |
| A0A6J1IHW7 | 5.7e-18 | 80.65 | uncharacterized protein LOC111477072 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| A0A6J1F6D4 | 5.7e-18 | 80.65 | uncharacterized protein LOC111442593 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6608015.1 | 6.7e-21 | 95.08 | hypothetical protein SDJN03_01357, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022941541.1 | 6.7e-21 | 95.08 | uncharacterized protein LOC111446814 [Cucurbita moschata] | [more] |
| XP_023523435.1 | 6.7e-21 | 95.08 | uncharacterized protein LOC111787648, partial [Cucurbita pepo subsp. pepo] | [more] |
| XP_008444253.1 | 6.9e-18 | 82.26 | PREDICTED: uncharacterized protein LOC103487633 [Cucumis melo] | [more] |
| KAG6591853.1 | 6.9e-18 | 80.65 | hypothetical protein SDJN03_14199, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G45310.1 | 4.5e-15 | 66.07 | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, infloresce... | [more] |
