CmaCh01G013490.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G013490.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 9636393 .. 9639806 (-)
Sequence length	189
RNA-Seq Expression	CmaCh01G013490.1
Synteny	CmaCh01G013490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGGTTTGTTGGACAAATAGTGGAATGGTTTGGTTTCTCCATTTTCTGATCCAATCTAAACTACTTCCTGCAACTCGAGAGGTACATCACCTAATCCCATTAGACAATGGATCATAAAACTTTATCTTCTAGTCGTGAATTTTCCATGTAGCATGCGATACATAGGGGTTTAAAAGTTGTTTATTCATCTTTACCATGATCTCAATGTGAATTCTCAATATTGTTTATAACTTATACATGGGTTAGACTATCTACTTTAATGTAACTTATTTGTTTGTTCACTTCTGTGACTATGAGTGATCCGTTCTCACGTCTTTCCAAGCTTTATGCAATTGATTAAGTTTCTATATAGAAAGCCCACAATTATGAGTCATCACATTTGGGGACTTTTATGATGTATTGGACTCTATCATTGGATCAAGCCGTGGGTGCTGATGCTCGTCTTCACTACCATAATTTCTGCAGGTAAAGCAAACAAACTAGTTGGATATGTATTGAGTATTTATTTGACTTGTCTTCTAAATATTAGGAAGTTATTTACTATCTATACTTTAGTTGAATATTCAACCTATGCATATTATGTTGATGATTATTGAGAGAGAGAGTAGTCTCACGTGGGTTAATTAAGAGGAAGATCATGGGTTTATAAGTAAGGAATAGTATCTCCATTGATATGAGGCATTTTGGGAAAATCCAAAGCAAAACCATGAGAGTTTATGCTCAAAGTGGATAATATCCTACTATTGTGGAGGTTTGTGATTCCTAACATATTATACAAAAAAAAAAAAAAACATACAACTTGGATAATTATTGGATACGTATTGAATATTCTGAATAGTATTATACATACATTAAAAATAATACATTAATACATTTCGAGAGTAGGATAAATCTAAGTCATTTTTAGTTTTTTTTTCCAAAAAGGTTTAAGTCGTGTGTGCTTTTGCTGGCCTACATGGGTCGGGTCGGGTGGTTGTAGTTGACAACCATAGCTACCATATTATGAAGGCCTTTCTTCCAAAGAAATGAGTATAACCAAATCCTAATGGAACTTTAAATTATTGTTATAATTGTTTTGAATGGAAGGACAGATGTGTGGCTGGGGGCTGTTCATTGAATAAAGTCCACAGTTTTGTCTTAAGCTTTAGACTCAAAAGTGGATTCTTCTTGATTTAGGCCTGTGCTTTGATTCATTAAATGTTTGGTTTTGAATGCTTGGCTTGTATTTTGCCACATTACTTTGCCACTTATTGTCTTTATTCTTGTGATATTGGTTGGCCGACTTGTCGGTTAAAATGCTCTGGGGACCAGTTTTTGTTCTTTATTACTCTTTGCTAATAAGCACAATATGTGAGATAACTCCTTGTTACTCTAAATTATTGGTTGAGTTGAGAAGTGTCAGTAATCAGCTAGAAGTTTTTACTAGATGGTGATGCTTTGCTAGTTGAACTTGGTCGAAATATTAGTTCCTATTCGATAGGGTTAATTGTGTCATCTGGTTCTTGCACGGTACACCATATTGCATAATGTTTGAATTGGGTTTAGGCTAACGTGTTGTATCGTGGTCGGTCAAGGATAATACATGTTTCAAAGGAAAAAAATTATATGGTATTACTATTGAGTGTTTGCATAATGTTTGAACTGTGTTTAGGCTGACGTCTTGTGTTGTAGTCGATCGAGGATGTACATGTTACGAAGCGGAGAAATACTCTACGGTATCACTATGGAGTGTTTAAACGAGGTATCGTTGGCTTGGTTATTATTGTATATGGATTTGACTGAACTTTATAGATAAATTACTCACTCAACCATATTATTGAGAGATGGAAATCTTTTAATACTAGATTTGCATAATATTTACTATTTACCCATTTAAACAATGGCAAAAAGAAGGGCCTTGAATAAAATTAGTTGGTTGGGTTTACATGGGTGTATGTTAAAAATGGTTAGACGAACACGACTCTCCACAATGGTATGATTCCATTCAACACCTTCTCCCTCGAACAAACTATGCCTCTCCTTAATCGAGGCTCGTCTCCCTTTTCTTTTGAAGGCATATGTTTGACATTTGAGGATTCTATTGACCTAGTTAAATTTAGGGCATGACTTTGATACCATGTTACACGAACACGACTCTCCACAATGGTATGATATAAAGATTTCATGTTAATGGAGAGAGTATTCTTTGATTATAAATTCATGATCATTTCCTAAATCCGATGTGGAACTTTCCTTCAACAATTATAAATTTATAAACTAATTTTAAACTAAAATGATTAGAGAAATTTTAAAATCAAAAGTGTCATAGTTCATGTTGGGTTGGTAGGGCCAAGTGATTCGGGAGATTTGATTAAAGTTTATGGTCCCAAATTTCAAAGAGGGAGACTGAAAAGTCAATAGGTAAAACAAATGGGACAGAAATTGCTATGTGAATTGCTTGACAACGTCCATCACATATTATTGTATAGACCCTTTCAAAGTCGGTCATTTTTTTACTTCTTTTTCCAATTTTTCTTTACAAATATCTCTGACTATTGCATTCAAAGTTCATAAATATAATCTGAAAAAAAATGTATTATTTGTTGTTTTTAATTGATTTTTTGGGTGACAAGTTCAATCATAATTGTGTGTATGTTGCTTAGAATTTTCTTGCAGAAGTCTAATCACATTCATACAAATATTAGGTTTTTCGCGAACAGTTTGAACCTCTAATCCTGGATAAGTTAGTTTAGATATTAATAAGTTGTTATAAAATAGTTTTTCTAATGTTCTGTTCGTGACTATGATTTAGAATTTAGATTTTGTGTTCAATAGCTTCTATGTTCTTTTGTGGCATGACTATGTTACTTGATTCAAATTGTTTCTAAGGGCAGAAACTATTGAGTCGTTTTACATATGTTTTCCTCAGGAGGTCACTTAACATAAAATTGTTTCTAGCTTCATTACAATGGTTACATGAGTGAGTCGCATGAGAATAAGGTACACTTTATTGTGGTTCTTTTAAATTTATTTATAATTTTATATTTTTTAAGATCATTTTTATTTAAATATGATATGATTTCTTTATTGGGTGAGATGTAGGAAATTTTCGTGTTATTCTTATTTAAATCGCATTTACCCTTTGTTTAATACAAAAATGTCTCAAGATCTTGTAAGGTGGGAATATTTGTTTGTTTGATCTTATACATCACAAAAATTATATATTTATGAATTATTCTTTTTTATCAGACTATGA

mRNA sequence

ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGACTATGA

Coding sequence (CDS)

ATGGCTCTTTTGTTTGTGGTTAGCATCTCATTAAAGAGCGTTGCTGAGTTTTTCACGGCCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACATGCTTACCCGATGCTGCCAAATATTGCTCGTTTGCTTGTTCCTCTGACCTCGAGACTATGA

Protein sequence

MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTSRL

Homology

[Close]

BLAST of CmaCh01G013490.1 vs. ExPASy TrEMBL
Match: A0A6J1FLE1 (uncharacterized protein LOC111446814 OS=Cucurbita moschata OX=3662 GN=LOC111446814 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 228 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 287

Query: 61  R 62
           R
Sbjct: 288 R 288

[Close]

BLAST of CmaCh01G013490.1 vs. ExPASy TrEMBL
Match: A0A5A7UFG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00660 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 145 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 204

Query: 61  RL 63
           R+
Sbjct: 205 RV 206

[Close]

BLAST of CmaCh01G013490.1 vs. ExPASy TrEMBL
Match: A0A1S3B9G5 (uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 227 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 286

Query: 61  RL 63
           R+
Sbjct: 287 RV 288

[Close]

BLAST of CmaCh01G013490.1 vs. ExPASy TrEMBL
Match: A0A6J1IHW7 (uncharacterized protein LOC111477072 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477072 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAV+LLSFNWF+LGI AYP LPN+ARLL PL S
Sbjct: 256 VALMFVVSISLKSVVEFFTTIKNKPALDAVSLLSFNWFVLGILAYPTLPNMARLLAPLAS 315

Query: 61  RL 63
           R+
Sbjct: 316 RV 317

[Close]

BLAST of CmaCh01G013490.1 vs. ExPASy TrEMBL
Match: A0A6J1F6D4 (uncharacterized protein LOC111442593 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442593 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.7e-18
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPN+AR+L PL S
Sbjct: 256 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNMARVLAPLAS 315

Query: 61  RL 63
           R+
Sbjct: 316 RV 317

[Close]

BLAST of CmaCh01G013490.1 vs. NCBI nr
Match: KAG6608015.1 (hypothetical protein SDJN03_01357, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 293 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 352

Query: 61  R 62
           R
Sbjct: 353 R 353

[Close]

BLAST of CmaCh01G013490.1 vs. NCBI nr
Match: XP_022941541.1 (uncharacterized protein LOC111446814 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 228 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 287

Query: 61  R 62
           R
Sbjct: 288 R 288

[Close]

BLAST of CmaCh01G013490.1 vs. NCBI nr
Match: XP_023523435.1 (uncharacterized protein LOC111787648, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 6.7e-21
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           MALLFVVSISLKSV EFFT IKNKPALDAVALLSFNWFILGI AYPMLPNIARLLVPLTS
Sbjct: 147 MALLFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARLLVPLTS 206

Query: 61  R 62
           R
Sbjct: 207 R 207

[Close]

BLAST of CmaCh01G013490.1 vs. NCBI nr
Match: XP_008444253.1 (PREDICTED: uncharacterized protein LOC103487633 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP LPNIAR L PL S
Sbjct: 227 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPTLPNIARFLAPLAS 286

Query: 61  RL 63
           R+
Sbjct: 287 RV 288

[Close]

BLAST of CmaCh01G013490.1 vs. NCBI nr
Match: KAG6591853.1 (hypothetical protein SDJN03_14199, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 6.9e-18
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVPLTS 60
           +AL+FVVSISLKSV EFFT IKNKPALDAVALLSFNWF+LGI AYP+LPN+AR+L PL S
Sbjct: 263 VALMFVVSISLKSVVEFFTTIKNKPALDAVALLSFNWFVLGILAYPILPNMARVLAPLAS 322

Query: 61  RL 63
           R+
Sbjct: 323 RV 324

[Close]

BLAST of CmaCh01G013490.1 vs. TAIR 10
Match: AT5G45310.1 (unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-15
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2   ALLFVVSISLKSVAEFFTAIKNKPALDAVALLSFNWFILGIHAYPMLPNIARLLVP 58
           AL  VV ISLKSV +FF+ +KNKPALDAVAL+S NWFI+G   YP LP +AR++VP
Sbjct: 268 ALFTVVGISLKSVVQFFSTVKNKPALDAVALMSLNWFIVGTLTYPTLPRVARIVVP 323

The following BLAST results are available for this feature:

BLAST of CmaCh01G013490.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLE1	3.2e-21	95.08	uncharacterized protein LOC111446814 OS=Cucurbita moschata OX=3662 GN=LOC1114468...	[more]
A0A5A7UFG8	3.3e-18	82.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B9G5	3.3e-18	82.26	uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=...	[more]
A0A6J1IHW7	5.7e-18	80.65	uncharacterized protein LOC111477072 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F6D4	5.7e-18	80.65	uncharacterized protein LOC111442593 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmaCh01G013490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608015.1	6.7e-21	95.08	hypothetical protein SDJN03_01357, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022941541.1	6.7e-21	95.08	uncharacterized protein LOC111446814 [Cucurbita moschata]	[more]
XP_023523435.1	6.7e-21	95.08	uncharacterized protein LOC111787648, partial [Cucurbita pepo subsp. pepo]	[more]
XP_008444253.1	6.9e-18	82.26	PREDICTED: uncharacterized protein LOC103487633 [Cucumis melo]	[more]
KAG6591853.1	6.9e-18	80.65	hypothetical protein SDJN03_14199, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh01G013490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45310.1	4.5e-15	66.07	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, infloresce...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36073	FAMILY NOT NAMED	coord: 1..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G013490	CmaCh01G013490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013490.1:exon:949	CmaCh01G013490.1:exon:949	exon
CmaCh01G013490.1:exon:950	CmaCh01G013490.1:exon:950	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013490.1:cds	CmaCh01G013490.1:cds_2	CDS
CmaCh01G013490.1:cds	CmaCh01G013490.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G013490.1	CmaCh01G013490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane