Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
tctacaccatgggaggcaacaacaggcaaaagaaagctcactcatctttttcaatctttagctttttcaaatctagaaggggtcgaaaaggagaccattgcgaccacggtgggtcttggctagacgagatgccgagatcgagcaaggtgtggccgagcgatgaggacaaacctcatcattgggttgctgaacctggtattgatagaaaggccaaagattacattgataggatctatcgaaaccgtgtttttgaatctgagcgccaaactgttaccgtacctcccaatggaacaaaacccaatgtgtagataatttgtgtggatatatttttttttccatatagtatttgttcattaaataatgtagttttatgattgtaggatttattttgagttgattaaagtgtgactatgtatctcctaatggagttctctctcatttatatatgcccctcttctctatcacttgcgttgtagttttagttgtttacattttttgaagtattttcacagatagttttcca
mRNA sequence
tctacaccatgggaggcaacaacaggcaaaagaaagctcactcatctttttcaatctttagctttttcaaatctagaaggggtcgaaaaggagaccattgcgaccacggtgggtcttggctagacgagatgccgagatcgagcaaggtgtggccgagcgatgaggacaaacctcatcattgggttgctgaacctggtattgatagaaaggccaaagattacattgataggatctatcgaaaccgtgtttttgaatctgagcgccaaactgttaccgtacctcccaatggaacaaaacccaatgtgtagataatttgtgtggatatatttttttttccatatagtatttgttcattaaataatgtagttttatgattgtaggatttattttgagttgattaaagtgtgactatgtatctcctaatggagttctctctcatttatatatgcccctcttctctatcacttgcgttgtagttttagttgtttacattttttgaagtattttcacagatagttttcca
Coding sequence (CDS)
atgggaggcaacaacaggcaaaagaaagctcactcatctttttcaatctttagctttttcaaatctagaaggggtcgaaaaggagaccattgcgaccacggtgggtcttggctagacgagatgccgagatcgagcaaggtgtggccgagcgatgaggacaaacctcatcattgggttgctgaacctggtattgatagaaaggccaaagattacattgataggatctatcgaaaccgtgtttttgaatctgagcgccaaactgttaccgtacctcccaatggaacaaaacccaatgtgtag
Protein sequence
MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV
Homology
BLAST of Clc08G02410 vs. NCBI nr
Match:
KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])
HSP 1 Score: 190.7 bits (483), Expect = 6.2e-45
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0
Query: 1 MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1 MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99
BLAST of Clc08G02410 vs. NCBI nr
Match:
KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0
Query: 1 MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
MGGNNRQKK+HSSFSIFSFFKSRRGRKGD+C+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1 MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
EPGIDRKAKDYIDRIYRNRVFESERQT+T+ PNGTK NV
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99
BLAST of Clc08G02410 vs. NCBI nr
Match:
KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])
HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0
Query: 3 GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2 GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
BLAST of Clc08G02410 vs. NCBI nr
Match:
KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 174.1 bits (440), Expect = 6.0e-40
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 0
Query: 1 MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
MGGNNR KKAHSSFSIF+FFKSRR RK DHCDH G W DE+PRSSK+WPSDEDK H WVA
Sbjct: 1 MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGW-DEIPRSSKIWPSDEDKIHRWVA 60
Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTK 97
EPGIDRKAKDYIDRIYRNRVFESERQTVT+P +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTK 95
BLAST of Clc08G02410 vs. NCBI nr
Match:
KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0
Query: 1 MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
MGGNNR KKAHSSFSIF+FFK RRGRK DHCDH G W DEMPRS+KVWPSDEDK H WVA
Sbjct: 1 MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCW-DEMPRSNKVWPSDEDKMHRWVA 60
Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTK 97
EPGIDRKAKDYIDRIYRNRV ESERQTVT+P +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95
BLAST of Clc08G02410 vs. ExPASy TrEMBL
Match:
A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0
Query: 1 MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1 MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99
BLAST of Clc08G02410 vs. ExPASy TrEMBL
Match:
A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 0
Query: 3 GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
G NRQKK+HSSFSIFSFFKSRRGRKGDH DHGG+WLDEMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2 GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61
Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
BLAST of Clc08G02410 vs. ExPASy TrEMBL
Match:
A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 5.1e-45
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0
Query: 1 MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
MGGNNRQKK+HSSFSIFSFFKSRRGRKGD+C+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1 MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60
Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
EPGIDRKAKDYIDRIYRNRVFESERQT+T+ PNGTK NV
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99
BLAST of Clc08G02410 vs. ExPASy TrEMBL
Match:
A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 5.7e-44
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0
Query: 3 GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2 GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61
Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
BLAST of Clc08G02410 vs. ExPASy TrEMBL
Match:
A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 2.6e-36
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0
Query: 3 GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
G ++ KK+HSSFS FSF KS+ RKGDH DHGGSWLDE RS KVWPSDEDK HHWVAEP
Sbjct: 2 GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61
Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPN 94
GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92
BLAST of Clc08G02410 vs. TAIR 10
Match:
AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0
Query: 1 MGGNNRQKKAHSS--FSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHW 60
MGG NR +HSS FS+FSFFK+RR + + GSW D+ + K SDEDK +W
Sbjct: 1 MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60
Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
VAEPGIDRKA +I + + RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83
BLAST of Clc08G02410 vs. TAIR 10
Match:
AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0
Query: 36 SWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPP 93
SW D++ + K W SDEDK +WVAEPGIDRKA +I + + +RV ESERQ T+PP
Sbjct: 16 SW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN45869.1 | 6.2e-45 | 89.90 | hypothetical protein Csa_005516 [Cucumis sativus] | [more] |
| KAA0035003.1 | 1.1e-44 | 88.89 | hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343... | [more] |
| KGN45870.1 | 1.2e-43 | 87.63 | hypothetical protein Csa_004960 [Cucumis sativus] | [more] |
| KAG6592308.1 | 6.0e-40 | 85.42 | hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6592316.1 | 1.7e-39 | 85.42 | hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KAK6 | 3.0e-45 | 89.90 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1 | [more] |
| A0A0A0KBW1 | 3.0e-45 | 90.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1 | [more] |
| A0A5A7SWT9 | 5.1e-45 | 88.89 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0K7Y2 | 5.7e-44 | 87.63 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1 | [more] |
| A0A0A0K8V3 | 2.6e-36 | 81.32 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G05858.1 | 1.6e-14 | 51.65 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
| AT5G26620.1 | 1.2e-09 | 56.14 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
