Clc08G02410.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc08G02410.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 4719204 .. 4719726 (+)
Sequence length	523
RNA-Seq Expression	Clc08G02410.1
Synteny	Clc08G02410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

tctacaccatgggaggcaacaacaggcaaaagaaagctcactcatctttttcaatctttagctttttcaaatctagaaggggtcgaaaaggagaccattgcgaccacggtgggtcttggctagacgagatgccgagatcgagcaaggtgtggccgagcgatgaggacaaacctcatcattgggttgctgaacctggtattgatagaaaggccaaagattacattgataggatctatcgaaaccgtgtttttgaatctgagcgccaaactgttaccgtacctcccaatggaacaaaacccaatgtgtagataatttgtgtggatatatttttttttccatatagtatttgttcattaaataatgtagttttatgattgtaggatttattttgagttgattaaagtgtgactatgtatctcctaatggagttctctctcatttatatatgcccctcttctctatcacttgcgttgtagttttagttgtttacattttttgaagtattttcacagatagttttcca

mRNA sequence

tctacaccatgggaggcaacaacaggcaaaagaaagctcactcatctttttcaatctttagctttttcaaatctagaaggggtcgaaaaggagaccattgcgaccacggtgggtcttggctagacgagatgccgagatcgagcaaggtgtggccgagcgatgaggacaaacctcatcattgggttgctgaacctggtattgatagaaaggccaaagattacattgataggatctatcgaaaccgtgtttttgaatctgagcgccaaactgttaccgtacctcccaatggaacaaaacccaatgtgtagataatttgtgtggatatatttttttttccatatagtatttgttcattaaataatgtagttttatgattgtaggatttattttgagttgattaaagtgtgactatgtatctcctaatggagttctctctcatttatatatgcccctcttctctatcacttgcgttgtagttttagttgtttacattttttgaagtattttcacagatagttttcca

Coding sequence (CDS)

atgggaggcaacaacaggcaaaagaaagctcactcatctttttcaatctttagctttttcaaatctagaaggggtcgaaaaggagaccattgcgaccacggtgggtcttggctagacgagatgccgagatcgagcaaggtgtggccgagcgatgaggacaaacctcatcattgggttgctgaacctggtattgatagaaaggccaaagattacattgataggatctatcgaaaccgtgtttttgaatctgagcgccaaactgttaccgtacctcccaatggaacaaaacccaatgtgtag

Protein sequence

MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV

Homology

[Close]

BLAST of Clc08G02410.1 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 6.2e-45
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Clc08G02410.1 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKK+HSSFSIFSFFKSRRGRKGD+C+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+T+ PNGTK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Clc08G02410.1 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Clc08G02410.1 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-40
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
          MGGNNR KKAHSSFSIF+FFKSRR RK DHCDH G W DE+PRSSK+WPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGW-DEIPRSSKIWPSDEDKIHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTK 97
          EPGIDRKAKDYIDRIYRNRVFESERQTVT+P +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTK 95

[Close]

BLAST of Clc08G02410.1 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
          MGGNNR KKAHSSFSIF+FFK RRGRK DHCDH G W DEMPRS+KVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCW-DEMPRSNKVWPSDEDKMHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTK 97
          EPGIDRKAKDYIDRIYRNRV ESERQTVT+P +GTK
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVLESERQTVTLPASGTK 95

[Close]

BLAST of Clc08G02410.1 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFSFFKSRRGRKGDHC+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+ PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Clc08G02410.1 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.0e-45
Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKSRRGRKGDH DHGG+WLDEMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Clc08G02410.1 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.1e-45
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MGGNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKK+HSSFSIFSFFKSRRGRKGD+C+H GS LDEMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+T+ PNGTK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Clc08G02410.1 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.7e-44
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 3   GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFSFFKS+RGRKGDH DHGG+W DEMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPPNGTKPNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+ PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Clc08G02410.1 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.6e-36
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 3  GNNRQKKAHSSFSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FSF KS+  RKGDH DHGGSWLDE  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPPN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of Clc08G02410.1 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 1  MGGNNRQKKAHSS--FSIFSFFKSRRGRKGDHCDHGGSWLDEMPRSSKVWPSDEDKPHHW 60
          MGG NR   +HSS  FS+FSFFK+RR  +    +  GSW D+   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Clc08G02410.1 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 36 SWLDEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPP 93
          SW D++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESERQ  T+PP
Sbjct: 16 SW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQ--TLPP 68

The following BLAST results are available for this feature:

BLAST of Clc08G02410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45869.1	6.2e-45	89.90	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAA0035003.1	1.1e-44	88.89	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45870.1	1.2e-43	87.63	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592308.1	6.0e-40	85.42	hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592316.1	1.7e-39	85.42	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc08G02410.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G02410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6	3.0e-45	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0KBW1	3.0e-45	90.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	5.1e-45	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K7Y2	5.7e-44	87.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0K8V3	2.6e-36	81.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Clc08G02410.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	1.6e-14	51.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.2e-09	56.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..54
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc08G02410	Clc08G02410	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc08G02410.1-exon	Clc08G02410.1-exon-ClcChr08:4719204..4719726	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc08G02410.1-five_prime_utr	Clc08G02410.1-five_prime_utr-ClcChr08:4719204..4719211	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc08G02410.1-cds	Clc08G02410.1-cds-ClcChr08:4719212..4719511	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc08G02410.1-three_prime_utr	Clc08G02410.1-three_prime_utr-ClcChr08:4719512..4719726	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc08G02410.1	Clc08G02410.1-protein	polypeptide