Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA
mRNA sequence
ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA
Coding sequence (CDS)
ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA
Protein sequence
MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLAAA
Homology
BLAST of Cla97C01G006460 vs. NCBI nr
Match:
XP_038875502.1 (uncharacterized protein LOC120067929 [Benincasa hispida])
HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61
Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 0
Query: 1 MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKV 60
MKSINS+ SISSTNSA FL P T S HR RRLP+AVT+ ASSRSSAD NNNNYYASGKV
Sbjct: 1 MKSINSLDRSISSTNSAPFLFPST-SAHRHRRLPLAVTVTASSRSSADKNNNNYYASGKV 60
Query: 61 VDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPS 120
VDESMIVLRKRIHEIKMAEQSH+PPADW DWEKRYYS+YDSHICEALGYLQ+HLMNTRPS
Sbjct: 61 VDESMIVLRKRIHEIKMAEQSHEPPADWLDWEKRYYSDYDSHICEALGYLQTHLMNTRPS 120
Query: 121 VALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
VALGMLL+I LSVP SSA+LLHRFFQIAAALLA
Sbjct: 121 VALGMLLLITLSVPFSSAILLHRFFQIAAALLA 152
BLAST of Cla97C01G006460 vs. NCBI nr
Match:
KAA0046315.1 (uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa])
HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 116/159 (72.96%), Postives = 125/159 (78.62%), Query Frame = 0
Query: 1 MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------Y 60
MKSINS++FS S L P P H R+ AVT+RAS +ADNNNN Y
Sbjct: 1 MKSINSLSFSTPSP-----LFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDY 60
Query: 61 YASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHL 120
YA GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKRYYS+YDSHICEALGYLQSHL
Sbjct: 61 YAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHL 120
Query: 121 MNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
MNTRPSVALGMLL+II+SVPLSSALLLHRFF IA ALLA
Sbjct: 121 MNTRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLA 154
BLAST of Cla97C01G006460 vs. NCBI nr
Match:
XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])
HSP 1 Score: 203.4 bits (516), Expect = 1.4e-48
Identity = 111/149 (74.50%), Postives = 124/149 (83.22%), Query Frame = 0
Query: 10 SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDES 69
SISS NSA FL P +PS R RRLP+ I +S S SS +NNNNYYASGK+VDES
Sbjct: 3 SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62
Query: 70 MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALG 129
MIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63 MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122
Query: 130 MLLIIILSVPLSSALLLHRFFQIAAALLA 153
+LL+I LSVPLSSA++LHRF IAAALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151
BLAST of Cla97C01G006460 vs. NCBI nr
Match:
XP_022939420.1 (uncharacterized protein LOC111445338 [Cucurbita moschata])
HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 110/147 (74.83%), Postives = 122/147 (82.99%), Query Frame = 0
Query: 10 SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMI 69
SISS NSA FL P S R RR P T+ ASSR S++ NNNNYYASGK+VDESMI
Sbjct: 3 SISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMI 62
Query: 70 VLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGML 129
VLRKRIHEIKM E+SH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSVALG+L
Sbjct: 63 VLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGIL 122
Query: 130 LIIILSVPLSSALLLHRFFQIAAALLA 153
L+I LSVPLSSA++LHRF IAAALLA
Sbjct: 123 LLITLSVPLSSAVILHRFIDIAAALLA 149
BLAST of Cla97C01G006460 vs. NCBI nr
Match:
XP_022989988.1 (uncharacterized protein LOC111487016 [Cucurbita maxima])
HSP 1 Score: 201.8 bits (512), Expect = 4.2e-48
Identity = 110/154 (71.43%), Postives = 126/154 (81.82%), Query Frame = 0
Query: 1 MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGK 60
M SINS+ SI ST+SA L PP +PS HR RR P A T+ ASSR ++N+YYA GK
Sbjct: 1 MNSINSL-LSIPSTHSAPLLFPPISPSSHRRRRPPPAFTVTASSRPKEQADSNSYYADGK 60
Query: 61 VVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRP 120
+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNYDS+ICEALGYLQSHLMNTRP
Sbjct: 61 LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 120
Query: 121 SVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
SVALGML ++ LSVP+SSA++LHRF +IA LLA
Sbjct: 121 SVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLA 153
BLAST of Cla97C01G006460 vs. ExPASy TrEMBL
Match:
A0A5A7TY46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00240 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 9.7e-51
Identity = 116/159 (72.96%), Postives = 125/159 (78.62%), Query Frame = 0
Query: 1 MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------Y 60
MKSINS++FS S L P P H R+ AVT+RAS +ADNNNN Y
Sbjct: 1 MKSINSLSFSTPSP-----LFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDY 60
Query: 61 YASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHL 120
YA GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKRYYS+YDSHICEALGYLQSHL
Sbjct: 61 YAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHL 120
Query: 121 MNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
MNTRPSVALGMLL+II+SVPLSSALLLHRFF IA ALLA
Sbjct: 121 MNTRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLA 154
BLAST of Cla97C01G006460 vs. ExPASy TrEMBL
Match:
A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 7.0e-49
Identity = 111/149 (74.50%), Postives = 124/149 (83.22%), Query Frame = 0
Query: 10 SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDES 69
SISS NSA FL P +PS R RRLP+ I +S S SS +NNNNYYASGK+VDES
Sbjct: 3 SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62
Query: 70 MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALG 129
MIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63 MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122
Query: 130 MLLIIILSVPLSSALLLHRFFQIAAALLA 153
+LL+I LSVPLSSA++LHRF IAAALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151
BLAST of Cla97C01G006460 vs. ExPASy TrEMBL
Match:
A0A6J1FMN3 (uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC111445338 PE=4 SV=1)
HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 110/147 (74.83%), Postives = 122/147 (82.99%), Query Frame = 0
Query: 10 SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMI 69
SISS NSA FL P S R RR P T+ ASSR S++ NNNNYYASGK+VDESMI
Sbjct: 3 SISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMI 62
Query: 70 VLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGML 129
VLRKRIHEIKM E+SH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSVALG+L
Sbjct: 63 VLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGIL 122
Query: 130 LIIILSVPLSSALLLHRFFQIAAALLA 153
L+I LSVPLSSA++LHRF IAAALLA
Sbjct: 123 LLITLSVPLSSAVILHRFIDIAAALLA 149
BLAST of Cla97C01G006460 vs. ExPASy TrEMBL
Match:
A0A6J1JRY7 (uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 110/154 (71.43%), Postives = 126/154 (81.82%), Query Frame = 0
Query: 1 MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGK 60
M SINS+ SI ST+SA L PP +PS HR RR P A T+ ASSR ++N+YYA GK
Sbjct: 1 MNSINSL-LSIPSTHSAPLLFPPISPSSHRRRRPPPAFTVTASSRPKEQADSNSYYADGK 60
Query: 61 VVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRP 120
+VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNYDS+ICEALGYLQSHLMNTRP
Sbjct: 61 LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 120
Query: 121 SVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
SVALGML ++ LSVP+SSA++LHRF +IA LLA
Sbjct: 121 SVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLA 153
BLAST of Cla97C01G006460 vs. ExPASy TrEMBL
Match:
A0A0A0KPI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.5e-48
Identity = 112/159 (70.44%), Postives = 123/159 (77.36%), Query Frame = 0
Query: 1 MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-------NNNNY 60
M+SINS++FS S L P H R+ AVT+RAS +AD NNNNY
Sbjct: 1 MESINSLSFSTPS------LFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNY 60
Query: 61 YASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHL 120
YA GKVVDESMIVLRKRIHEIKMAEQ +PPADW DWEKR+YS+YDSHICEALGYLQSHL
Sbjct: 61 YAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHL 120
Query: 121 MNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
MNTRPSVALGMLL+II+SVPLSSALLLHRF IA ALLA
Sbjct: 121 MNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLA 153
BLAST of Cla97C01G006460 vs. TAIR 10
Match:
AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 124.8 bits (312), Expect = 6.1e-29
Identity = 61/118 (51.69%), Postives = 93/118 (78.81%), Query Frame = 0
Query: 37 VTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYS 96
+T+R S+ +S+ ++YY G++VDE+MIVLRKRIHE+KM E++++PP+ W DWEKR+Y+
Sbjct: 34 MTMRVSAAASS-GKDHYYGGGRLVDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYN 93
Query: 97 NYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLAAA 155
+YDS IC+++G LQS LMN+RP+VA+ LL +++SVP+SS ++ R + LLAAA
Sbjct: 94 SYDSVICDSVGLLQSFLMNSRPTVAIATLLFLLVSVPVSSTVIAFRLIDLLHWLLAAA 150
BLAST of Cla97C01G006460 vs. TAIR 10
Match:
AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 115.9 bits (289), Expect = 2.8e-26
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 0
Query: 39 IRASSRSSADNNN--------NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDW 98
+R S R + N +YY G+ VDE+M+VLRKRIHE+KM E++ +PP+ W W
Sbjct: 16 LRTSQRIATGTNRRRTTTVCADYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQW 75
Query: 99 EKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAAL 154
EKR+Y NYD+ IC+AL LQ+ LMN+RPSVA G L++++SVP+SSA+ R +A L
Sbjct: 76 EKRFYCNYDATICDALTLLQTFLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWL 135
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038875502.1 | 4.3e-61 | 86.27 | uncharacterized protein LOC120067929 [Benincasa hispida] | [more] |
| KAA0046315.1 | 2.0e-50 | 72.96 | uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa] | [more] |
| XP_022993164.1 | 1.4e-48 | 74.50 | uncharacterized protein LOC111489262 [Cucurbita maxima] | [more] |
| XP_022939420.1 | 3.2e-48 | 74.83 | uncharacterized protein LOC111445338 [Cucurbita moschata] | [more] |
| XP_022989988.1 | 4.2e-48 | 71.43 | uncharacterized protein LOC111487016 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TY46 | 9.7e-51 | 72.96 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A6J1JZG1 | 7.0e-49 | 74.50 | uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262... | [more] |
| A0A6J1FMN3 | 1.6e-48 | 74.83 | uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC1114453... | [more] |
| A0A6J1JRY7 | 2.0e-48 | 71.43 | uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016... | [more] |
| A0A0A0KPI5 | 4.5e-48 | 70.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G01300.1 | 6.1e-29 | 51.69 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
| AT1G15010.1 | 2.8e-26 | 48.78 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
