Cla97C01G006460.1 (mRNA) Watermelon (97103) v2.5

Overview


Name	Cla97C01G006460.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. 97103 (Watermelon (97103) v2.5)
Description	Mediator of RNA polymerase II transcription subunit
Location	Cla97Chr01: 6421413 .. 6421877 (+)
Sequence length	465
RNA-Seq Expression	Cla97C01G006460.1
Synteny	Cla97C01G006460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA

mRNA sequence

ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA

Coding sequence (CDS)

ATGAAATCCATTAATTCCATCGCCTTCTCAATCTCCTCCACCAATTCCGCTGCCTTCCTCCTCCCTCCCACTCCCTCCGGCCACCGCCTCCGCCGCCTACCAGTGGCTGTAACCATCAGAGCATCGTCTCGATCGTCAGCCGACAACAACAATAATTACTACGCGAGCGGGAAAGTGGTGGACGAGAGCATGATCGTTCTCCGGAAACGAATCCACGAGATCAAGATGGCGGAGCAAAGCCACGATCCGCCGGCCGATTGGTTTGATTGGGAAAAACGGTATTATTCCAATTACGATTCTCATATCTGTGAAGCTTTAGGCTATCTTCAATCTCATTTGATGAATACTCGACCTAGCGTGGCTTTGGGAATGCTCCTTATTATAATCCTCAGCGTTCCGCTTTCCTCCGCCCTCCTTCTCCACCGCTTCTTCCAAATCGCCGCCGCGCTTCTCGCCGCCGCTTAA

Protein sequence

MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLAAA

Homology

[Close]

BLAST of Cla97C01G006460.1 vs. NCBI nr
Match: XP_038875502.1 (uncharacterized protein LOC120067929 [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61
Identity = 132/153 (86.27%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGKV 60
           MKSINS+  SISSTNSA FL P T S HR RRLP+AVT+ ASSRSSAD NNNNYYASGKV
Sbjct: 1   MKSINSLDRSISSTNSAPFLFPST-SAHRHRRLPLAVTVTASSRSSADKNNNNYYASGKV 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPS 120
           VDESMIVLRKRIHEIKMAEQSH+PPADW DWEKRYYS+YDSHICEALGYLQ+HLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKMAEQSHEPPADWLDWEKRYYSDYDSHICEALGYLQTHLMNTRPS 120

Query: 121 VALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
           VALGMLL+I LSVP SSA+LLHRFFQIAAALLA
Sbjct: 121 VALGMLLLITLSVPFSSAILLHRFFQIAAALLA 152

[Close]

BLAST of Cla97C01G006460.1 vs. NCBI nr
Match: KAA0046315.1 (uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 116/159 (72.96%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 1   MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------Y 60
           MKSINS++FS  S      L  P P  H  R+   AVT+RAS   +ADNNNN       Y
Sbjct: 1   MKSINSLSFSTPSP-----LFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDY 60

Query: 61  YASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHL 120
           YA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKRYYS+YDSHICEALGYLQSHL
Sbjct: 61  YAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHL 120

Query: 121 MNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
           MNTRPSVALGMLL+II+SVPLSSALLLHRFF IA ALLA
Sbjct: 121 MNTRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLA 154

[Close]

BLAST of Cla97C01G006460.1 vs. NCBI nr
Match: XP_022993164.1 (uncharacterized protein LOC111489262 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 1.4e-48
Identity = 111/149 (74.50%), Postives = 124/149 (83.22%), Query Frame = 0


Query: 10  SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDES 69
           SISS NSA FL   P +PS  R RRLP+   I +S    S SS +NNNNYYASGK+VDES
Sbjct: 3   SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62

Query: 70  MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALG 129
           MIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63  MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122

Query: 130 MLLIIILSVPLSSALLLHRFFQIAAALLA 153
           +LL+I LSVPLSSA++LHRF  IAAALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151

[Close]

BLAST of Cla97C01G006460.1 vs. NCBI nr
Match: XP_022939420.1 (uncharacterized protein LOC111445338 [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 110/147 (74.83%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 10  SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMI 69
           SISS NSA FL   P  S  R RR P   T+ ASSR   S++ NNNNYYASGK+VDESMI
Sbjct: 3   SISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMI 62

Query: 70  VLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGML 129
           VLRKRIHEIKM E+SH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSVALG+L
Sbjct: 63  VLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGIL 122

Query: 130 LIIILSVPLSSALLLHRFFQIAAALLA 153
           L+I LSVPLSSA++LHRF  IAAALLA
Sbjct: 123 LLITLSVPLSSAVILHRFIDIAAALLA 149

[Close]

BLAST of Cla97C01G006460.1 vs. NCBI nr
Match: XP_022989988.1 (uncharacterized protein LOC111487016 [Cucurbita maxima])

HSP 1 Score: 201.8 bits (512), Expect = 4.2e-48
Identity = 110/154 (71.43%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGK 60
           M SINS+  SI ST+SA  L PP +PS HR RR P A T+ ASSR     ++N+YYA GK
Sbjct: 1   MNSINSL-LSIPSTHSAPLLFPPISPSSHRRRRPPPAFTVTASSRPKEQADSNSYYADGK 60

Query: 61  VVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRP 120
           +VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNYDS+ICEALGYLQSHLMNTRP
Sbjct: 61  LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 120

Query: 121 SVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
           SVALGML ++ LSVP+SSA++LHRF +IA  LLA
Sbjct: 121 SVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLA 153

[Close]

BLAST of Cla97C01G006460.1 vs. ExPASy TrEMBL
Match: A0A5A7TY46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00240 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.7e-51
Identity = 116/159 (72.96%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 1   MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSADNNNN-------Y 60
           MKSINS++FS  S      L  P P  H  R+   AVT+RAS   +ADNNNN       Y
Sbjct: 1   MKSINSLSFSTPSP-----LFSPAPHPHGRRKPLPAVTVRASREQAADNNNNNNNNYNDY 60

Query: 61  YASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHL 120
           YA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKRYYS+YDSHICEALGYLQSHL
Sbjct: 61  YAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRYYSDYDSHICEALGYLQSHL 120

Query: 121 MNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
           MNTRPSVALGMLL+II+SVPLSSALLLHRFF IA ALLA
Sbjct: 121 MNTRPSVALGMLLLIIVSVPLSSALLLHRFFHIAVALLA 154

[Close]

BLAST of Cla97C01G006460.1 vs. ExPASy TrEMBL
Match: A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.0e-49
Identity = 111/149 (74.50%), Postives = 124/149 (83.22%), Query Frame = 0


Query: 10  SISSTNSAAFL--LPPTPSGHRLRRLPVAVTIRAS----SRSSADNNNNYYASGKVVDES 69
           SISS NSA FL   P +PS  R RRLP+   I +S    S SS +NNNNYYASGK+VDES
Sbjct: 3   SISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDES 62

Query: 70  MIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALG 129
           MIVLRKRIHEIKM EQSH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSV+LG
Sbjct: 63  MIVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLG 122

Query: 130 MLLIIILSVPLSSALLLHRFFQIAAALLA 153
           +LL+I LSVPLSSA++LHRF  IAAALLA
Sbjct: 123 ILLLITLSVPLSSAVILHRFIDIAAALLA 151

[Close]

BLAST of Cla97C01G006460.1 vs. ExPASy TrEMBL
Match: A0A6J1FMN3 (uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC111445338 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 110/147 (74.83%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 10  SISSTNSAAFL-LPPTPSGHRLRRLPVAVTIRASSR---SSADNNNNYYASGKVVDESMI 69
           SISS NSA FL   P  S  R RR P   T+ ASSR   S++ NNNNYYASGK+VDESMI
Sbjct: 3   SISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMI 62

Query: 70  VLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRPSVALGML 129
           VLRKRIHEIKM E+SH+PP+DW DWEKR YS+YDSHICEALGYLQSHLMNTRPSVALG+L
Sbjct: 63  VLRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGIL 122

Query: 130 LIIILSVPLSSALLLHRFFQIAAALLA 153
           L+I LSVPLSSA++LHRF  IAAALLA
Sbjct: 123 LLITLSVPLSSAVILHRFIDIAAALLA 149

[Close]

BLAST of Cla97C01G006460.1 vs. ExPASy TrEMBL
Match: A0A6J1JRY7 (uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 110/154 (71.43%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MKSINSIAFSISSTNSAAFLLPP-TPSGHRLRRLPVAVTIRASSRSSAD-NNNNYYASGK 60
           M SINS+  SI ST+SA  L PP +PS HR RR P A T+ ASSR     ++N+YYA GK
Sbjct: 1   MNSINSL-LSIPSTHSAPLLFPPISPSSHRRRRPPPAFTVTASSRPKEQADSNSYYADGK 60

Query: 61  VVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHLMNTRP 120
           +VDESMIVLRKRIHEIK AEQ+HDPP DWFDWEKR YSNYDS+ICEALGYLQSHLMNTRP
Sbjct: 61  LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 120

Query: 121 SVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
           SVALGML ++ LSVP+SSA++LHRF +IA  LLA
Sbjct: 121 SVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLA 153

[Close]

BLAST of Cla97C01G006460.1 vs. ExPASy TrEMBL
Match: A0A0A0KPI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.5e-48
Identity = 112/159 (70.44%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 1   MKSINSIAFSISSTNSAAFLLPPTPSGHRLRRLPVAVTIRASSRSSAD-------NNNNY 60
           M+SINS++FS  S      L  P    H  R+   AVT+RAS   +AD       NNNNY
Sbjct: 1   MESINSLSFSTPS------LFSPAAHPHVRRKPLPAVTVRASREQAADSNNNNKNNNNNY 60

Query: 61  YASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYSNYDSHICEALGYLQSHL 120
           YA GKVVDESMIVLRKRIHEIKMAEQ  +PPADW DWEKR+YS+YDSHICEALGYLQSHL
Sbjct: 61  YAGGKVVDESMIVLRKRIHEIKMAEQRQEPPADWLDWEKRWYSDYDSHICEALGYLQSHL 120

Query: 121 MNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLA 153
           MNTRPSVALGMLL+II+SVPLSSALLLHRF  IA ALLA
Sbjct: 121 MNTRPSVALGMLLLIIISVPLSSALLLHRFLHIAVALLA 153

[Close]

BLAST of Cla97C01G006460.1 vs. TAIR 10
Match: AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-29
Identity = 61/118 (51.69%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 37  VTIRASSRSSADNNNNYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDWEKRYYS 96
           +T+R S+ +S+   ++YY  G++VDE+MIVLRKRIHE+KM E++++PP+ W DWEKR+Y+
Sbjct: 34  MTMRVSAAASS-GKDHYYGGGRLVDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYN 93

Query: 97  NYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAALLAAA 155
           +YDS IC+++G LQS LMN+RP+VA+  LL +++SVP+SS ++  R   +   LLAAA
Sbjct: 94  SYDSVICDSVGLLQSFLMNSRPTVAIATLLFLLVSVPVSSTVIAFRLIDLLHWLLAAA 150

[Close]

BLAST of Cla97C01G006460.1 vs. TAIR 10
Match: AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-26
Identity = 60/123 (48.78%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 39  IRASSRSSADNNN--------NYYASGKVVDESMIVLRKRIHEIKMAEQSHDPPADWFDW 98
           +R S R +   N         +YY  G+ VDE+M+VLRKRIHE+KM E++ +PP+ W  W
Sbjct: 16  LRTSQRIATGTNRRRTTTVCADYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQW 75

Query: 99  EKRYYSNYDSHICEALGYLQSHLMNTRPSVALGMLLIIILSVPLSSALLLHRFFQIAAAL 154
           EKR+Y NYD+ IC+AL  LQ+ LMN+RPSVA G  L++++SVP+SSA+   R   +A  L
Sbjct: 76  EKRFYCNYDATICDALTLLQTFLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWL 135

The following BLAST results are available for this feature:

BLAST of Cla97C01G006460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875502.1	4.3e-61	86.27	uncharacterized protein LOC120067929 [Benincasa hispida]	[more]
KAA0046315.1	2.0e-50	72.96	uncharacterized protein E6C27_scaffold149G00240 [Cucumis melo var. makuwa]	[more]
XP_022993164.1	1.4e-48	74.50	uncharacterized protein LOC111489262 [Cucurbita maxima]	[more]
XP_022939420.1	3.2e-48	74.83	uncharacterized protein LOC111445338 [Cucurbita moschata]	[more]
XP_022989988.1	4.2e-48	71.43	uncharacterized protein LOC111487016 [Cucurbita maxima]	[more]

BLAST of Cla97C01G006460.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C01G006460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY46	9.7e-51	72.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1JZG1	7.0e-49	74.50	uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262...	[more]
A0A6J1FMN3	1.6e-48	74.83	uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]
A0A6J1JRY7	2.0e-48	71.43	uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016...	[more]
A0A0A0KPI5	4.5e-48	70.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571480 PE=4 SV=1	[more]

BLAST of Cla97C01G006460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01300.1	6.1e-29	51.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15010.1	2.8e-26	48.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (97103) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33782:SF13	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT	coord: 34..152
None	No IPR available	PANTHER	PTHR33782	OS01G0121600 PROTEIN	coord: 34..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G006460	Cla97C01G006460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G006460.1-exon	Cla97C01G006460.1-exon-Cla97Chr01:6421413..6421877	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G006460.1-cds	Cla97C01G006460.1-cds-Cla97Chr01:6421413..6421877	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G006460.1	Cla97C01G006460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane