Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGCCACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCGAAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA
mRNA sequence
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGCCACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCGAAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA
Coding sequence (CDS)
ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGCCACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCGAAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA
Protein sequence
MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPCK
Homology
BLAST of ClCG11G004870 vs. NCBI nr
Match:
KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])
HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 70/108 (64.81%), Postives = 76/108 (70.37%), Query Frame = 0
Query: 1 MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMF 60
MG R SF G+ VV M L TI CSSH CRGSVL KANATY T ELLIY DI RYLMF
Sbjct: 1 MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60
Query: 61 DGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
+G +AKTG T ++NV ACGNGAGNSF C GS NKK+CNAY C
Sbjct: 61 NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108
BLAST of ClCG11G004870 vs. NCBI nr
Match:
KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])
HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0
Query: 10 VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNT 69
+ VV M L TIL SSH CR SVL KANATYG TAELLIY D+TRYLM+D A++KTG T
Sbjct: 16 MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75
Query: 70 PNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
++ V C NG GNSF CGGS NKK+CNAY C
Sbjct: 76 KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113
BLAST of ClCG11G004870 vs. NCBI nr
Match:
KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 114.0 bits (284), Expect = 8.0e-22
Identity = 57/106 (53.77%), Postives = 68/106 (64.15%), Query Frame = 0
Query: 1 MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDG 60
MGGRCSFWGVAV A+ +T ILCSS+ R S L +ANATYGE ELL+ +I R+L F
Sbjct: 1 MGGRCSFWGVAVAALMVTIILCSSNSSRASSLGRANATYGEVEVELLVRREIARFLNFKN 60
Query: 61 AEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
+ T T N V++CGNG GN C GSP NKK CN+Y C
Sbjct: 61 MKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106
BLAST of ClCG11G004870 vs. NCBI nr
Match:
KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])
HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 1 MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLM 60
MGGR SF G+ +V + + TIL SS+ CRGS+L KANAT G T EL+I DITRYL+
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
Query: 61 FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
F GA A TG T + N+ CGNGAGN+F CGG+ +N ++CNAY C
Sbjct: 61 FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
BLAST of ClCG11G004870 vs. NCBI nr
Match:
KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])
HSP 1 Score: 109.0 bits (271), Expect = 2.6e-20
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0
Query: 1 MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLM 60
MGGR SF G+ +V + + TIL SS+ CRGSVL KANATY G +T E++IY DITR+LM
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60
Query: 61 FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
G++ TGNT N+ C NG GN F CGG+ +N+++CN Y+ PC
Sbjct: 61 PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109
BLAST of ClCG11G004870 vs. ExPASy TrEMBL
Match:
A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 5.2e-27
Identity = 70/108 (64.81%), Postives = 76/108 (70.37%), Query Frame = 0
Query: 1 MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMF 60
MG R SF G+ VV M L TI CSSH CRGSVL KANATY T ELLIY DI RYLMF
Sbjct: 1 MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60
Query: 61 DGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
+G +AKTG T ++NV ACGNGAGNSF C GS NKK+CNAY C
Sbjct: 61 NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108
BLAST of ClCG11G004870 vs. ExPASy TrEMBL
Match:
A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0
Query: 10 VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNT 69
+ VV M L TIL SSH CR SVL KANATYG TAELLIY D+TRYLM+D A++KTG T
Sbjct: 16 MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75
Query: 70 PNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
++ V C NG GNSF CGGS NKK+CNAY C
Sbjct: 76 KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113
BLAST of ClCG11G004870 vs. ExPASy TrEMBL
Match:
A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 7.8e-23
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 0
Query: 1 MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMF 60
MG R SF G+ VV + L TIL SSH CRGSVL KANATY T EL+IYGDI R+LM
Sbjct: 1 MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60
Query: 61 DGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
G++AKTG T RNV ACGNGAGN++ CGGS N+ +C+AY C
Sbjct: 61 SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108
BLAST of ClCG11G004870 vs. ExPASy TrEMBL
Match:
A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 5.6e-21
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 0
Query: 1 MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLM 60
MGGR SF G+ +V + + TIL SS+ CRGS+L KANAT G T EL+I DITRYL+
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
Query: 61 FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
F GA A TG T + N+ CGNGAGN+F CGG+ +N ++CNAY C
Sbjct: 61 FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
BLAST of ClCG11G004870 vs. ExPASy TrEMBL
Match:
A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0
Query: 1 MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLM 60
MGGR SF G+ +V + + TIL SS+ CRGSVL KANATY G +T E++IY DITR+LM
Sbjct: 1 MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60
Query: 61 FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
G++ TGNT N+ C NG GN F CGG+ +N+++CN Y+ PC
Sbjct: 61 PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0039430.1 | 1.1e-26 | 64.81 | hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061... | [more] |
| KGN52518.1 | 7.2e-23 | 62.24 | hypothetical protein Csa_007870 [Cucumis sativus] | [more] |
| KAG6578548.1 | 8.0e-22 | 53.77 | hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN52519.1 | 1.2e-20 | 54.13 | hypothetical protein Csa_008872 [Cucumis sativus] | [more] |
| KAA0039429.1 | 2.6e-20 | 52.29 | hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BR80 | 5.2e-27 | 64.81 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0KSJ4 | 3.5e-23 | 62.24 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1 | [more] |
| A0A0A0KVT8 | 7.8e-23 | 59.26 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1 | [more] |
| A0A0A0KUG7 | 5.6e-21 | 54.13 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1 | [more] |
| A0A5D3BNE4 | 1.2e-20 | 52.29 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
