ClCG11G004870.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG11G004870.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr11: 5187561 .. 5187884 (+)
Sequence length	324
RNA-Seq Expression	ClCG11G004870.1
Synteny	ClCG11G004870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGCCACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCGAAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA

mRNA sequence

ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGCCACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCGAAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA

Coding sequence (CDS)

ATGGGTGGCCGTTGTTCGTTTTGGGGAGTAGCGGTGGTGGCGATGACGTTAACAACCATCCTGTGTTCCAGCCATTGCTGCAGAGGTTCGGTTCTGACCAAGGCCAACGCCACCTACGGCGAGGCGACGGCGGAGTTGCTGATCTATGGTGATATAACTCGGTATCTCATGTTTGATGGAGCCGAAGCCAAGACAGGTAATACCCCGAACCGGAACGTCGAAGCTTGTGGCAACGGTGCCGGAAACTCTTTTGAAGCCTGCGGTGGTAGCCCCGACAATAAAAAACGTTGCAACGCATACAATCGCGGTGTCCCTTGCAAATAA

Protein sequence

MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPCK

Homology

[Close]

BLAST of ClCG11G004870.1 vs. NCBI nr
Match: KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 70/108 (64.81%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMF 60
           MG R SF G+  VV M L TI CSSH CRGSVL KANATY    T ELLIY DI RYLMF
Sbjct: 1   MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60

Query: 61  DGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
           +G +AKTG T ++NV ACGNGAGNSF  C GS  NKK+CNAY     C
Sbjct: 61  NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of ClCG11G004870.1 vs. NCBI nr
Match: KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 10  VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNT 69
           + VV M L TIL SSH CR SVL KANATYG   TAELLIY D+TRYLM+D A++KTG T
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  PNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
            ++ V  C NG GNSF  CGGS  NKK+CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of ClCG11G004870.1 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 8.0e-22
Identity = 57/106 (53.77%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMTLTTILCSSHCCRGSVLTKANATYGEATAELLIYGDITRYLMFDG 60
           MGGRCSFWGVAV A+ +T ILCSS+  R S L +ANATYGE   ELL+  +I R+L F  
Sbjct: 1   MGGRCSFWGVAVAALMVTIILCSSNSSRASSLGRANATYGEVEVELLVRREIARFLNFKN 60

Query: 61  AEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
            +  T  T N  V++CGNG GN    C GSP NKK CN+Y     C
Sbjct: 61  MKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]

BLAST of ClCG11G004870.1 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLM 60
           MGGR SF G+ +V + +   TIL SS+ CRGS+L KANAT G   T EL+I  DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
           F GA A TG T + N+  CGNGAGN+F  CGG+ +N ++CNAY     C
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of ClCG11G004870.1 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-20
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLM 60
           MGGR SF G+ +V + +   TIL SS+ CRGSVL KANATY G +T E++IY DITR+LM
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
             G++  TGNT   N+  C NG GN F  CGG+ +N+++CN Y+   PC
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL
Match: A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.2e-27
Identity = 70/108 (64.81%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMF 60
           MG R SF G+  VV M L TI CSSH CRGSVL KANATY    T ELLIY DI RYLMF
Sbjct: 1   MGSRSSFSGLTMVVVMMLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLMF 60

Query: 61  DGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
           +G +AKTG T ++NV ACGNGAGNSF  C GS  NKK+CNAY     C
Sbjct: 61  NGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL
Match: A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-23
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 10  VAVVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMFDGAEAKTGNT 69
           + VV M L TIL SSH CR SVL KANATYG   TAELLIY D+TRYLM+D A++KTG T
Sbjct: 16  MVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVTRYLMYDHADSKTGKT 75

Query: 70  PNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
            ++ V  C NG GNSF  CGGS  NKK+CNAY     C
Sbjct: 76  KDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDC 113

[Close]

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL
Match: A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.8e-23
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MGGRCSFWGVA-VVAMTLTTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLMF 60
           MG R SF G+  VV + L TIL SSH CRGSVL KANATY    T EL+IYGDI R+LM 
Sbjct: 1   MGSRSSFSGLTMVVVVMLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLMP 60

Query: 61  DGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
            G++AKTG T  RNV ACGNGAGN++  CGGS  N+ +C+AY     C
Sbjct: 61  SGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

[Close]

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL
Match: A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.6e-21
Identity = 59/109 (54.13%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATYGEA-TAELLIYGDITRYLM 60
           MGGR SF G+ +V + +   TIL SS+ CRGS+L KANAT G   T EL+I  DITRYL+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
           F GA A TG T + N+  CGNGAGN+F  CGG+ +N ++CNAY     C
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

[Close]

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 1   MGGRCSFWGVAVVAMTL--TTILCSSHCCRGSVLTKANATY-GEATAELLIYGDITRYLM 60
           MGGR SF G+ +V + +   TIL SS+ CRGSVL KANATY G +T E++IY DITR+LM
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FDGAEAKTGNTPNRNVEACGNGAGNSFEACGGSPDNKKRCNAYNRGVPC 107
             G++  TGNT   N+  C NG GN F  CGG+ +N+++CN Y+   PC
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

The following BLAST results are available for this feature:

BLAST of ClCG11G004870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039430.1	1.1e-26	64.81	hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061...	[more]
KGN52518.1	7.2e-23	62.24	hypothetical protein Csa_007870 [Cucumis sativus]	[more]
KAG6578548.1	8.0e-22	53.77	hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN52519.1	1.2e-20	54.13	hypothetical protein Csa_008872 [Cucumis sativus]	[more]
KAA0039429.1	2.6e-20	52.29	hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061...	[more]

BLAST of ClCG11G004870.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR80	5.2e-27	64.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KSJ4	3.5e-23	62.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1	[more]
A0A0A0KVT8	7.8e-23	59.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1	[more]
A0A0A0KUG7	5.6e-21	54.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1	[more]
A0A5D3BNE4	1.2e-20	52.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of ClCG11G004870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG11G004870	ClCG11G004870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G004870.1-exon	ClCG11G004870.1-exon-CG_Chr11:5187561..5187884	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG11G004870.1-cds	ClCG11G004870.1-cds-CG_Chr11:5187561..5187884	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG11G004870.1	ClCG11G004870.1-protein	polypeptide