Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGACTCACTTTTAAAGTTAGGGTATGAGTGCAATAATGGAAGCAACTCTAATTTGACATTGACCTTTGACGCCAAGTGTCGAGGATTTTTCAACCAAATCGATTGAATTTGTTCTTCGAAAATTTGTGCATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTATGTTTTATGCTATCTTTGCTTTCTAAACTTCCTTCCATTGTTTTTTGATTCCTTCCTTTCGTCTGATTGCTGTACTGTTCCCAATTTTAGGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA
mRNA sequence
CTTTGACTCACTTTTAAAGTTAGGGTATGAGTGCAATAATGGAAGCAACTCTAATTTGACATTGACCTTTGACGCCAAGTGTCGAGGATTTTTCAACCAAATCGATTGAATTTGTTCTTCGAAAATTTGTGCATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA
Coding sequence (CDS)
ATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA
Protein sequence
MAFATRFLRPLPRALVFASSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGLAFSGAKGTYQRKSPLIGKLEFFNFSYSQSSAAYQVYL
Homology
BLAST of ClCG10G013990 vs. NCBI nr
Match:
XP_038903549.1 (uncharacterized protein LOC120090109 [Benincasa hispida])
HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFASSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGLA 60
MAFA +FLRPLPRA VFASSSSS FFNP RFCCVKF+ FKSFPTNFGSLLCNR+SN LA
Sbjct: 1 MAFAPKFLRPLPRAFVFASSSSSSFFNPVRFCCVKFQHFKSFPTNFGSLLCNRISNFRLA 60
Query: 61 FSGAKGTYQRKSPLIG 77
FSGA G Y RKSPLIG
Sbjct: 61 FSGANGIYLRKSPLIG 76
BLAST of ClCG10G013990 vs. NCBI nr
Match:
XP_004141102.1 (uncharacterized protein LOC101216879 [Cucumis sativus] >KGN59691.1 hypothetical protein Csa_001414 [Cucumis sativus])
HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA----SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSN 60
MAFA++FLRPLPRA VFA SSSSS F NP RFCC KFEPFK FPTNFGS LCNR+ N
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSSSFLNPARFCCAKFEPFKLFPTNFGSFLCNRLPN 60
Query: 61 RGLAFSGAKGTYQRKSPLIG 77
LAFSGAKG Y PL+G
Sbjct: 61 LRLAFSGAKGIY---LPLVG 77
BLAST of ClCG10G013990 vs. NCBI nr
Match:
TYK00818.1 (uncharacterized protein E5676_scaffold1545G00190 [Cucumis melo var. makuwa])
HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIG 77
AFSGAKG Y PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74
BLAST of ClCG10G013990 vs. NCBI nr
Match:
XP_008443551.1 (PREDICTED: uncharacterized protein LOC103487112 isoform X1 [Cucumis melo] >KAA0053647.1 uncharacterized protein E6C27_scaffold135G00180 [Cucumis melo var. makuwa])
HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIG 77
AFSGAKG Y PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74
BLAST of ClCG10G013990 vs. NCBI nr
Match:
XP_008443552.1 (PREDICTED: uncharacterized protein LOC103487112 isoform X2 [Cucumis melo])
HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIGKL 79
AFSGAKG Y PLI +L
Sbjct: 61 AFSGAKGIY---LPLIDRL 76
BLAST of ClCG10G013990 vs. ExPASy TrEMBL
Match:
A0A0A0LI06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838700 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA----SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSN 60
MAFA++FLRPLPRA VFA SSSSS F NP RFCC KFEPFK FPTNFGS LCNR+ N
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSSSFLNPARFCCAKFEPFKLFPTNFGSFLCNRLPN 60
Query: 61 RGLAFSGAKGTYQRKSPLIG 77
LAFSGAKG Y PL+G
Sbjct: 61 LRLAFSGAKGIY---LPLVG 77
BLAST of ClCG10G013990 vs. ExPASy TrEMBL
Match:
A0A5D3BP24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00190 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIG 77
AFSGAKG Y PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74
BLAST of ClCG10G013990 vs. ExPASy TrEMBL
Match:
A0A5A7UGM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00180 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIG 77
AFSGAKG Y PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74
BLAST of ClCG10G013990 vs. ExPASy TrEMBL
Match:
A0A1S3B8A6 (uncharacterized protein LOC103487112 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487112 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIG 77
AFSGAKG Y PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74
BLAST of ClCG10G013990 vs. ExPASy TrEMBL
Match:
A0A1S3B8D2 (uncharacterized protein LOC103487112 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487112 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0
Query: 1 MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
MAFA++FLRPLPRA VFA SSSSS FNP RFCC KFEPF FPTNFGS LCNR+ N L
Sbjct: 1 MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60
Query: 61 AFSGAKGTYQRKSPLIGKL 79
AFSGAKG Y PLI +L
Sbjct: 61 AFSGAKGIY---LPLIDRL 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038903549.1 | 3.7e-26 | 82.89 | uncharacterized protein LOC120090109 [Benincasa hispida] | [more] |
| XP_004141102.1 | 2.3e-20 | 71.25 | uncharacterized protein LOC101216879 [Cucumis sativus] >KGN59691.1 hypothetical ... | [more] |
| TYK00818.1 | 6.7e-20 | 74.03 | uncharacterized protein E5676_scaffold1545G00190 [Cucumis melo var. makuwa] | [more] |
| XP_008443551.1 | 6.7e-20 | 74.03 | PREDICTED: uncharacterized protein LOC103487112 isoform X1 [Cucumis melo] >KAA00... | [more] |
| XP_008443552.1 | 8.8e-20 | 72.15 | PREDICTED: uncharacterized protein LOC103487112 isoform X2 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LI06 | 1.1e-20 | 71.25 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838700 PE=4 SV=1 | [more] |
| A0A5D3BP24 | 3.2e-20 | 74.03 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UGM7 | 3.2e-20 | 74.03 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A1S3B8A6 | 3.2e-20 | 74.03 | uncharacterized protein LOC103487112 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| A0A1S3B8D2 | 4.2e-20 | 72.15 | uncharacterized protein LOC103487112 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
