ClCG10G013990.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G013990.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 28293909 .. 28294424 (+)
Sequence length	423
RNA-Seq Expression	ClCG10G013990.2
Synteny	ClCG10G013990.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGACTCACTTTTAAAGTTAGGGTATGAGTGCAATAATGGAAGCAACTCTAATTTGACATTGACCTTTGACGCCAAGTGTCGAGGATTTTTCAACCAAATCGATTGAATTTGTTCTTCGAAAATTTGTGCATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTATGTTTTATGCTATCTTTGCTTTCTAAACTTCCTTCCATTGTTTTTTGATTCCTTCCTTTCGTCTGATTGCTGTACTGTTCCCAATTTTAGGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA

mRNA sequence

CTTTGACTCACTTTTAAAGTTAGGGTATGAGTGCAATAATGGAAGCAACTCTAATTTGACATTGACCTTTGACGCCAAGTGTCGAGGATTTTTCAACCAAATCGATTGAATTTGTTCTTCGAAAATTTGTGCATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA

Coding sequence (CDS)

ATGGCCTTCGCCACAAGGTTTCTTCGCCCGCTCCCCAGAGCTTTGGTGTTCGCTTCGTCTTCATCTTCTTACTTCTTCAATCCCCCCAGATTCTGTTGTGTGAAATTTGAGCCCTTCAAATCGTTTCCCACGAACTTCGGATCATTACTCTGCAACCGCGTTTCTAATCGCGGACTTGCATTTTCTGGCGCTAAAGGAACTTATCAACGGAAGTCTCCTTTGATAGGCAAGCTTGAGTTCTTCAACTTTTCATATTCCCAATCATCTGCTGCATATCAAGTCTATCTGTAA

Protein sequence

MAFATRFLRPLPRALVFASSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGLAFSGAKGTYQRKSPLIGKLEFFNFSYSQSSAAYQVYL

Homology

[Close]

BLAST of ClCG10G013990.2 vs. NCBI nr
Match: XP_038903549.1 (uncharacterized protein LOC120090109 [Benincasa hispida])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 63/76 (82.89%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFASSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGLA 60
          MAFA +FLRPLPRA VFASSSSS FFNP RFCCVKF+ FKSFPTNFGSLLCNR+SN  LA
Sbjct: 1  MAFAPKFLRPLPRAFVFASSSSSSFFNPVRFCCVKFQHFKSFPTNFGSLLCNRISNFRLA 60

Query: 61 FSGAKGTYQRKSPLIG 77
          FSGA G Y RKSPLIG
Sbjct: 61 FSGANGIYLRKSPLIG 76

[Close]

BLAST of ClCG10G013990.2 vs. NCBI nr
Match: XP_004141102.1 (uncharacterized protein LOC101216879 [Cucumis sativus] >KGN59691.1 hypothetical protein Csa_001414 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA----SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSN 60
          MAFA++FLRPLPRA VFA    SSSSS F NP RFCC KFEPFK FPTNFGS LCNR+ N
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSSSFLNPARFCCAKFEPFKLFPTNFGSFLCNRLPN 60

Query: 61 RGLAFSGAKGTYQRKSPLIG 77
            LAFSGAKG Y    PL+G
Sbjct: 61 LRLAFSGAKGIY---LPLVG 77

[Close]

BLAST of ClCG10G013990.2 vs. NCBI nr
Match: TYK00818.1 (uncharacterized protein E5676_scaffold1545G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]

BLAST of ClCG10G013990.2 vs. NCBI nr
Match: XP_008443551.1 (PREDICTED: uncharacterized protein LOC103487112 isoform X1 [Cucumis melo] >KAA0053647.1 uncharacterized protein E6C27_scaffold135G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]

BLAST of ClCG10G013990.2 vs. NCBI nr
Match: XP_008443552.1 (PREDICTED: uncharacterized protein LOC103487112 isoform X2 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIGKL 79
          AFSGAKG Y    PLI +L
Sbjct: 61 AFSGAKGIY---LPLIDRL 76

[Close]

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL
Match: A0A0A0LI06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838700 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA----SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSN 60
          MAFA++FLRPLPRA VFA    SSSSS F NP RFCC KFEPFK FPTNFGS LCNR+ N
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSSSFLNPARFCCAKFEPFKLFPTNFGSFLCNRLPN 60

Query: 61 RGLAFSGAKGTYQRKSPLIG 77
            LAFSGAKG Y    PL+G
Sbjct: 61 LRLAFSGAKGIY---LPLVG 77

[Close]

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL
Match: A0A5D3BP24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00190 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL
Match: A0A5A7UGM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00180 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL
Match: A0A1S3B8A6 (uncharacterized protein LOC103487112 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487112 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIG 77
          AFSGAKG Y    PLIG
Sbjct: 61 AFSGAKGIY---LPLIG 74

[Close]

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL
Match: A0A1S3B8D2 (uncharacterized protein LOC103487112 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487112 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.2e-20
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MAFATRFLRPLPRALVFA-SSSSSYFFNPPRFCCVKFEPFKSFPTNFGSLLCNRVSNRGL 60
          MAFA++FLRPLPRA VFA SSSSS  FNP RFCC KFEPF  FPTNFGS LCNR+ N  L
Sbjct: 1  MAFASKFLRPLPRAFVFASSSSSSSSFNPARFCCAKFEPFTLFPTNFGSFLCNRLPNLRL 60

Query: 61 AFSGAKGTYQRKSPLIGKL 79
          AFSGAKG Y    PLI +L
Sbjct: 61 AFSGAKGIY---LPLIDRL 76

The following BLAST results are available for this feature:

BLAST of ClCG10G013990.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903549.1	3.7e-26	82.89	uncharacterized protein LOC120090109 [Benincasa hispida]	[more]
XP_004141102.1	2.3e-20	71.25	uncharacterized protein LOC101216879 [Cucumis sativus] >KGN59691.1 hypothetical ...	[more]
TYK00818.1	6.7e-20	74.03	uncharacterized protein E5676_scaffold1545G00190 [Cucumis melo var. makuwa]	[more]
XP_008443551.1	6.7e-20	74.03	PREDICTED: uncharacterized protein LOC103487112 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_008443552.1	8.8e-20	72.15	PREDICTED: uncharacterized protein LOC103487112 isoform X2 [Cucumis melo]	[more]

BLAST of ClCG10G013990.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI06	1.1e-20	71.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838700 PE=4 SV=1	[more]
A0A5D3BP24	3.2e-20	74.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UGM7	3.2e-20	74.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B8A6	3.2e-20	74.03	uncharacterized protein LOC103487112 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B8D2	4.2e-20	72.15	uncharacterized protein LOC103487112 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of ClCG10G013990.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG10G013990	ClCG10G013990	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G013990.2-exon	ClCG10G013990.2-exon-CG_Chr10:28293909..28294134	exon
ClCG10G013990.2-exon	ClCG10G013990.2-exon-CG_Chr10:28294228..28294424	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G013990.2-five_prime_utr	ClCG10G013990.2-five_prime_utr-CG_Chr10:28293909..28294040	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG10G013990.2-cds	ClCG10G013990.2-cds-CG_Chr10:28294041..28294134	CDS
ClCG10G013990.2-cds	ClCG10G013990.2-cds-CG_Chr10:28294228..28294424	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG10G013990.2	ClCG10G013990.2-protein	polypeptide