Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG
mRNA sequence
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG
Coding sequence (CDS)
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG
Protein sequence
MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF
Homology
BLAST of ClCG02G001810 vs. NCBI nr
Match:
XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])
HSP 1 Score: 167.5 bits (423), Expect = 5.9e-38
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDGI
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60
Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVDFG+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103
BLAST of ClCG02G001810 vs. NCBI nr
Match:
KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])
HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 85/107 (79.44%), Postives = 91/107 (85.05%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH HNLPS RLIFIPDHN +RLI D
Sbjct: 1 MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
Query: 61 DGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
DGISLVDFG+RDGSHIYIFF PL D+DGDD+EAR+ FFT DLLLF
Sbjct: 61 DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107
BLAST of ClCG02G001810 vs. NCBI nr
Match:
KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDG
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60
Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVDFG+RDGS IY+FFCPLDD DDL+ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFFNCPDLLLF 103
BLAST of ClCG02G001810 vs. NCBI nr
Match:
XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])
HSP 1 Score: 161.4 bits (407), Expect = 4.2e-36
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDG
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60
Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVDFG+RDGS IY+FFCPLD+ DDL+ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103
BLAST of ClCG02G001810 vs. NCBI nr
Match:
XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])
HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN LPSDRLIFI D N R I DD
Sbjct: 1 MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
Query: 61 GISLVDFGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
G SLVD GV+DGSHIYIFF PLD D+ GDD + +R FFTC ++LLF
Sbjct: 61 GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114
BLAST of ClCG02G001810 vs. ExPASy TrEMBL
Match:
A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDGI
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60
Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVDFG+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103
BLAST of ClCG02G001810 vs. ExPASy TrEMBL
Match:
A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 85/107 (79.44%), Postives = 91/107 (85.05%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH HNLPS RLIFIPDHN +RLI D
Sbjct: 1 MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
Query: 61 DGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
DGISLVDFG+RDGSHIYIFF PL D+DGDD+EAR+ FFT DLLLF
Sbjct: 61 DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107
BLAST of ClCG02G001810 vs. ExPASy TrEMBL
Match:
A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDG
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60
Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVDFG+RDGS IY+FFCPLD+ DDL+ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103
BLAST of ClCG02G001810 vs. ExPASy TrEMBL
Match:
A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)
HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN LPSDRLIFI D N R I DD
Sbjct: 1 MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
Query: 61 GISLVDFGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
G SLVD GV+DGSHIYIFF PLD D+ GDD + +R FFTC ++LLF
Sbjct: 61 GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114
BLAST of ClCG02G001810 vs. ExPASy TrEMBL
Match:
A0A2N9FN61 (Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16475 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
M++VV+NLTG+LFY+E+ +DAT+ DL+ +I NLPSDRLI I D NR + D DG+
Sbjct: 5 MRVVVENLTGTLFYIELGNDATLADLKKEIEDQQNLPSDRLILILDTNRSHRMNDDGDGV 64
Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDL 89
SLVD GV+DGSHIY+FF PLDD D+
Sbjct: 65 SLVDCGVKDGSHIYLFFNPLDDGSTHDV 92
BLAST of ClCG02G001810 vs. TAIR 10
Match:
AT2G32360.1 (Ubiquitin-like superfamily protein )
HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
MK+ V+ +TG+ +V +DATV ++ +I LP RLI I D RL+ + +D
Sbjct: 1 MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60
Query: 61 ISLVDFGVRDGSHIYIFF 78
+ L D GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022989504.1 | 5.9e-38 | 75.73 | uncharacterized protein LOC111486561 [Cucurbita maxima] | [more] |
| KGN43536.1 | 3.8e-37 | 79.44 | hypothetical protein Csa_020453 [Cucumis sativus] | [more] |
| KAG6589175.1 | 1.4e-36 | 73.79 | hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022930696.1 | 4.2e-36 | 72.82 | uncharacterized protein LOC111437093 [Cucurbita moschata] | [more] |
| XP_022136124.1 | 7.9e-27 | 61.40 | uncharacterized protein LOC111007894 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JPI4 | 2.8e-38 | 75.73 | uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561... | [more] |
| A0A0A0K6V6 | 1.8e-37 | 79.44 | Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044... | [more] |
| A0A6J1ERN4 | 2.0e-36 | 72.82 | uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370... | [more] |
| A0A6J1C3E5 | 3.8e-27 | 61.40 | uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007... | [more] |
| A0A2N9FN61 | 4.5e-20 | 57.95 | Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G32360.1 | 3.6e-09 | 39.74 | Ubiquitin-like superfamily protein | [more] |
