ClCG02G001810.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G001810.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Ubiquitin-like domain-containing protein
Location	CG_Chr02: 1815346 .. 1815657 (-)
Sequence length	312
RNA-Seq Expression	ClCG02G001810.1
Synteny	ClCG02G001810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATTTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

Protein sequence

MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF

Homology

[Close]

BLAST of ClCG02G001810.1 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 5.9e-38
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103

[Close]

BLAST of ClCG02G001810.1 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 85/107 (79.44%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
           DGISLVDFG+RDGSHIYIFF PL D+DGDD+EAR+ FFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of ClCG02G001810.1 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IY+FFCPLDD   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of ClCG02G001810.1 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 4.2e-36
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IY+FFCPLD+   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of ClCG02G001810.1 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 7.9e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
           MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN  LPSDRLIFI D N  R I   DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
           G SLVD GV+DGSHIYIFF PLD     D+ GDD +    +R  FFTC ++LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of ClCG02G001810.1 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103

[Close]

BLAST of ClCG02G001810.1 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 85/107 (79.44%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
           DGISLVDFG+RDGSHIYIFF PL D+DGDD+EAR+ FFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of ClCG02G001810.1 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.0e-36
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDFGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVDFG+RDGS IY+FFCPLD+   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of ClCG02G001810.1 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
           MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN  LPSDRLIFI D N  R I   DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDFGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
           G SLVD GV+DGSHIYIFF PLD     D+ GDD +    +R  FFTC ++LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of ClCG02G001810.1 vs. ExPASy TrEMBL
Match: A0A2N9FN61 (Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16475 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
          M++VV+NLTG+LFY+E+ +DAT+ DL+ +I    NLPSDRLI I D NR   + D  DG+
Sbjct: 5  MRVVVENLTGTLFYIELGNDATLADLKKEIEDQQNLPSDRLILILDTNRSHRMNDDGDGV 64

Query: 61 SLVDFGVRDGSHIYIFFCPLDDNDGDDL 89
          SLVD GV+DGSHIY+FF PLDD    D+
Sbjct: 65 SLVDCGVKDGSHIYLFFNPLDDGSTHDV 92

[Close]

BLAST of ClCG02G001810.1 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
          MK+ V+ +TG+    +V +DATV  ++ +I     LP  RLI  I D    RL+ + +D 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61 ISLVDFGVRDGSHIYIFF 78
          + L D GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78

The following BLAST results are available for this feature:

BLAST of ClCG02G001810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989504.1	5.9e-38	75.73	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KGN43536.1	3.8e-37	79.44	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
KAG6589175.1	1.4e-36	73.79	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	4.2e-36	72.82	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
XP_022136124.1	7.9e-27	61.40	uncharacterized protein LOC111007894 [Momordica charantia]	[more]

BLAST of ClCG02G001810.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G001810.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPI4	2.8e-38	75.73	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A0A0K6V6	1.8e-37	79.44	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1ERN4	2.0e-36	72.82	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1C3E5	3.8e-27	61.40	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A2N9FN61	4.5e-20	57.95	Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU...	[more]

BLAST of ClCG02G001810.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	3.6e-09	39.74	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..77 e-value: 4.9E-9 score: 37.8
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..76 e-value: 1.63017E-8 score: 45.2798
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 10.353413
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G001810	ClCG02G001810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G001810.1-exon	ClCG02G001810.1-exon-CG_Chr02:1815346..1815657	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G001810.1-cds	ClCG02G001810.1-cds-CG_Chr02:1815346..1815657	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G001810.1	ClCG02G001810.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding