Chy7G136870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G136870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH07: 11266545 .. 11267495 (+)
RNA-Seq Expression	Chy7G136870
Synteny	Chy7G136870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCCATTAGTGGACGGGTTGCTTATAGGGAGTCATCATCTGTGATACCACACATCATGTGGTGAAGTTGCACACACTCACTTGGGTTGAAGGTGATTAAGTTCTCTTCAGATTGCAAATGGTACGTTAAGATTCATCTTCTTCCTCCACATTCACTCTAGTATTCTAGGGTTTAGTCTCTTAATTAGCACTAGTTAATGTTCCATTTTCAGGCTCGAATACATGAGATTGAACCTACGAATGAGGAGTGTAATAGGAGTATTGAAATTCCTATGATGGAAGGTTACAAGGAAGACCTGCATGTCTTTCATCCTCATCACTTCGAGGATGCCCTACCATGCACTCACGTCGACAATCCCCCTCATCCTTCTCATGTGGACCATCCCTCTTCTTCTCCTCATCACATGGACCATCCCCCTCCTCCTTCTGCCCAACCTCCCTGGGTGACGTGTGATTGCAACCAATATGTATGTTGCATGGAAGGGACATTAGAACAGATAGAGGAGTCTTTACAATGAATGGAGTCATCTATGTCATCTGTGTTAGTTGAGCCGTCGTTCGTGTTTGCCGAGTTGTCGACCATAAAGGAGCTTCTGATGGCATTGGTTAAGGTATTACTATTAATTACTTGGAACATTTAATTTTTTTTGTCTTAGTTAAGTATTAGTCGTCACTTATGTTTCTACTACTTCCATAATAGGGTAACGCAGTTGACTCCCAACCATGCTACGACGATAGTGAAGGTATACGTCGTTCAATGCACCAGAGGCTCAAACTTTTGTTGGTGAGGCATTCGTGGATGTTCTCACTATGGACATTGATGGCCAACCCTGCTGATGAGGAGATGGAAACATCCGTCAGTGATGACCTCGGGGATGGTATCATACCCATCAATATACCATCGGGGGGTGAGGATGTGCCACCACTGCCTTTCCAACCCATGTTAG

mRNA sequence

ATGTCATCCATTAGTGGACGGGTTGCTTATAGGGAGTCATCATCTGTGATACCACACATCATGTGGTGAAGTTGCACACACTCACTTGGGTTGAAGGTGATTAAGTTCTCTTCAGATTGCAAATGGCTCGAATACATGAGATTGAACCTACGAATGAGGAGTGTAATAGGAGTATTGAAATTCCTATGATGGAAGGTTACAAGGAAGACCTGCATGTCTTTCATCCTCATCACTTCGAGGATGCCCTACCATGCACTCACGGTAACGCAGTTGACTCCCAACCATGCTACGACGATAGTGAAGGTATACGTCGTTCAATGCACCAGAGGCTCAAACTTTTGTTGGTGAGGCATTCGTGGATGTTCTCACTATGGACATTGATGGCCAACCCTGCTGATGAGGAGATGGAAACATCCGTCAGTGATGACCTCGGGGATGGTATCATACCCATCAATATACCATCGGGGGGTGAGGATGTGCCACCACTGCCTTTCCAACCCATGTTAG

Coding sequence (CDS)

ATGTCATCCATTAGTGGACGGGTTGCTTATAGGGAGTCATCATCTGTGATACCACACATCATGTGGTGAAGTTGCACACACTCACTTGGGTTGAAGGTGATTAAGTTCTCTTCAGATTGCAAATGGCTCGAATACATGAGATTGAACCTACGAATGAGGAGTGTAATAGGAGTATTGAAATTCCTATGATGGAAGGTTACAAGGAAGACCTGCATGTCTTTCATCCTCATCACTTCGAGGATGCCCTACCATGCACTCACGGTAACGCAGTTGACTCCCAACCATGCTACGACGATAGTGAAGGTATACGTCGTTCAATGCACCAGAGGCTCAAACTTTTGTTGGTGAGGCATTCGTGGATGTTCTCACTATGGACATTGATGGCCAACCCTGCTGATGAGGAGATGGAAACATCCGTCAGTGATGACCTCGGGGATGGTATCATACCCATCAATATACCATCGGGGGGTGAGGATGTGCCACCACTGCCTTTCCAACCCATGTTAG

Protein sequence

MSSISGRVAYRESSSVIPHIMW*SCTHSLGLKVIKFSSDCKWLEYMRLNLRMRSVIGVLKFL*WKVTRKTCMSFILITSRMPYHALTVTQLTPNHATTIVKVYVVQCTRGSNFCW*GIRGCSHYGH*WPTLLMRRWKHPSVMTSGMVSYPSIYHRGVRMCHHCLSNPC*

Homology

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BLAST of Chy7G136870 vs. NCBI nr
Match: KAA0035466.1 (hypothetical protein E6C27_scaffold285G001130 [Cucumis melo var. makuwa] >TYK31059.1 hypothetical protein E5676_scaffold455G003170 [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 8.68e-04
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MSSISGRVAYRESSSVIPHIMW*SCTHSLGLKVIK 35
          +SSISG V +R+SSS+IP IM  SCTHSLGLK ++
Sbjct: 41 ISSISGPVLHRDSSSMIPRIMQWSCTHSLGLKSLE 75

The following BLAST results are available for this feature:

BLAST of Chy7G136870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G136870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G136870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035466.1	8.68e-04	65.71	hypothetical protein E6C27_scaffold285G001130 [Cucumis melo var. makuwa] >TYK310...	[more]

BLAST of Chy7G136870 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G136870.1	Chy7G136870.1	mRNA