Chy1G009550 (gene) Cucumber (hystrix) v1

Overview
NameChy1G009550
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH01: 9439118 .. 9440056 (-)
RNA-Seq ExpressionChy1G009550
SyntenyChy1G009550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTTCATCGGGTCACAAATCCATTGGATCTGGCATAATCTAAACTTTGGCGTCTACCAACTTGCTGATTGGACGGTTACTAACCACACTTGTCGTCTTGTGGTTTCGTCTCATTGTCTGTTCATTGCGTGGTCTTTTGGTTCGTCGCTTGATGTGTTGACCAAATGAAAGTATTGATTCACCGCTTTTCTTCATATTTTCTTTGATGTTTCTGATCTCTTCTTTAATCATAATCTTGCGTTGAAAACATTAAAACAAACAAACATTGTAATCTTTTGTACACTTGTGTTGGCATAGTACAATTTTCATATAAATTCATCACATTTCAATACTTTAAATCTCAATTTAGATTGGTTAACTTGTACTTTTACAAGTTATGATGTGGTGTCTAGTTTTTCTTGTGTAGTTCATAAGCAACTAGCATATCCGAACCGCTTAAAAGTCTGAACCGAAGAATAAACCGCGTCGTCGGCACAAAAGGGCTGAAAAACTTAGAATTTTTTTGGAAAAAATGGGACCAATTTAGACCGCTGGTGTAGAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAGAAACCTTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTACATTTTCTCTGCACCACATTTTCTTTCTTTGCTCAAGTATGTCTCTCTCTCTCTCCTAATCTCTTGTTTCTCTTCATTCTGTTTATTCTCTTTTAAATTCATTTTTCAAATATCTGTTTGGTTGCTGAGAAAACTGTGCTGGGAAACGTACAAGCATCGAGTGTTTTCGATTTCTCTAGTTCATTATTCAGCATTTTGTTTAGGAACTACTGGATTAGTTTGAATTAACTGTTTATTTGTTTAATACGTCGAACTCAAGGTATTTCTCAGACACCGGAAGTTGAAGAGAGGATTTTACTGCCAGTGGTAT

mRNA sequence

ATGTCGTTCATCGGGTCACAAATCCATTGGATCTGGCATAATCTAAACTTTGGCGTCTACCAACTTGCTGATTGGACGGTTACTAACCACACTTGTCGTCTTGTGGTTTCGTCTCATTGTCTGTTCATTGCGTGGTCTTTTGTTCATAAGCAACTAGCATATCCGAACCGCTTAAAAGTCTGAACCGAAGAATAAACCGCGTCGTCGGCACAAAAGGGCTGAAAAACTTAGAATTTTTTTGGAAAAAATGGGACCAATTTAGACCGCTGGTGTAGAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAGAAACCTTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTACATTTTCTCTGCACCACATTTTCTTTCTTTGCTCAAGTATTTCTCAGACACCGGAAGTTGAAGAGAGGATTTTACTGCCAGTGGTAT

Coding sequence (CDS)

ATGTCGTTCATCGGGTCACAAATCCATTGGATCTGGCATAATCTAAACTTTGGCGTCTACCAACTTGCTGATTGGACGGTTACTAACCACACTTGTCGTCTTGTGGTTTCGTCTCATTGTCTGTTCATTGCGTGGTCTTTTGTTCATAAGCAACTAGCATATCCGAACCGCTTAAAAGTCTGAACCGAAGAATAAACCGCGTCGTCGGCACAAAAGGGCTGAAAAACTTAGAATTTTTTTGGAAAAAATGGGACCAATTTAGACCGCTGGTGTAGAAAAAAAAGAAAAGAAAAAGAAAAAGAAAAGAAACCTTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTACATTTTCTCTGCACCACATTTTCTTTCTTTGCTCAAGTATTTCTCAGACACCGGAAGTTGAAGAGAGGATTTTACTGCCAGTGGTAT

Protein sequence

MSFIGSQIHWIWHNLNFGVYQLADWTVTNHTCRLVVSSHCLFIAWSFVHKQLAYPNRLKV*TEE*TASSAQKG*KT*NFFGKNGTNLDRWCRKKRKEKEKEKKPSSTALPPLGFWSFHSSYIFSAPHFLSLLKYFSDTGS*REDFTASGX
Homology
[Close]
BLAST of Chy1G009550 vs. ExPASy TrEMBL
Match: A0A0A0K8R9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219220 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 110/138 (79.71%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 1   MSFIGSQIHWIWHNLNFGVYQLADWTVTNHTCRLVVSSHCLFIAWSFVHKQLAYPNRLKV 60
           MS I SQIHWIWHNLNFGVYQLADWT TNH+CRLVVSSHCLFI WSF HKQ AYPNRLK 
Sbjct: 1   MSLITSQIHWIWHNLNFGVYQLADWTFTNHSCRLVVSSHCLFIPWSFDHKQPAYPNRLKR 60

Query: 61  *TEE*TASSAQK-G*KT*NFFGKNGTNLDRWCR--KKRKEKEKEKKPSSTALPPLGFWSF 120
              +       K   KT  FFGKNGTNLDRWCR  KKRKEKEKEKKPSSTALPPLGFWSF
Sbjct: 61  SDPKNKPRRRHKRAEKTQIFFGKNGTNLDRWCRKKKKRKEKEKEKKPSSTALPPLGFWSF 120

Query: 121 HSSYIFSAPHFLSLLKYF 136
           HSS IFS PHFLSLLKYF
Sbjct: 121 HSSCIFSTPHFLSLLKYF 138

[Close]
BLAST of Chy1G009550 vs. NCBI nr
Match: KAE8646064.1 (hypothetical protein Csa_016379, partial [Cucumis sativus])

HSP 1 Score: 218 bits (555), Expect = 4.06e-70
Identity = 110/138 (79.71%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 1   MSFIGSQIHWIWHNLNFGVYQLADWTVTNHTCRLVVSSHCLFIAWSFVHKQLAYPNRLKV 60
           MS I SQIHWIWHNLNFGVYQLADWT TNH+CRLVVSSHCLFI WSF HKQ AYPNRLK 
Sbjct: 1   MSLITSQIHWIWHNLNFGVYQLADWTFTNHSCRLVVSSHCLFIPWSFDHKQPAYPNRLKR 60

Query: 61  *TEE*TASSAQK-G*KT*NFFGKNGTNLDRWCRKK--RKEKEKEKKPSSTALPPLGFWSF 120
              +       K   KT  FFGKNGTNLDRWCRKK  RKEKEKEKKPSSTALPPLGFWSF
Sbjct: 61  SDPKNKPRRRHKRAEKTQIFFGKNGTNLDRWCRKKKKRKEKEKEKKPSSTALPPLGFWSF 120

Query: 121 HSSYIFSAPHFLSLLKYF 135
           HSS IFS PHFLSLLKYF
Sbjct: 121 HSSCIFSTPHFLSLLKYF 138

The following BLAST results are available for this feature:
BLAST of Chy1G009550 vs.
Match NameE-valueIdentityDescription
BLAST of Chy1G009550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8R97.0e-5479.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219220 PE=4 SV=1[more]
BLAST of Chy1G009550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646064.14.06e-7079.71hypothetical protein Csa_016379, partial [Cucumis sativus][more]
BLAST of Chy1G009550 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G009550.1Chy1G009550.1mRNA